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Faiz A, Imkamp K, van der Wiel E, Boudewijn IM, Koppelman GH, Brandsma CA, Kerstjens HAM, Timens W, Vroegop S, Pasma HR, Boersma WG, Wielders P, van den Elshout F, Mansour K, Steiling K, Spira A, Lenburg ME, Heijink IH, Postma DS, van den Berge M. Identifying a nasal gene expression signature associated with hyperinflation and treatment response in severe COPD. Sci Rep. 2020 10 15; 10(1):17415.View Related Profiles. PMID: 33060632; PMCID: PMC7562702; DOI: 10.1038/s41598-020-72551-0;
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Billatos E, Ash SY, Duan F, Xu K, Romanoff J, Marques H, Moses E, Han MK, Regan EA, Bowler RP, Mason SE, Doyle TJ, San José Estépar R, Rosas IO, Ross JC, Xiao X, Liu H, Liu G, Sukumar G, Wilkerson M, Dalgard C, Stevenson C, Whitney D, Aberle D, Spira A, San José Estépar R, Lenburg ME, Washko GR. Distinguishing Smoking-Related Lung Disease Phenotypes Via Imaging and Molecular Features. Chest. 2021 02; 159(2):549-563.View Related Profiles. PMID: 32946850; PMCID: PMC8039011; DOI: 10.1016/j.chest.2020.08.2115;
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Drizik E, Corbett S, Zheng Y, Vermeulen R, Dai Y, Hu W, Ren D, Duan H, Niu Y, Xu J, Fu W, Meliefste K, Zhou B, Zhang X, Yang J, Bassig B, Liu H, Ye M, Liu G, Jia X, Meng T, Bin P, Zhang J, Silverman D, Spira A, Rothman N, Lenburg ME, Lan Q. Transcriptomic changes in the nasal epithelium associated with diesel engine exhaust exposure. Environ Int. 2020 04; 137:105506.View Related Profiles. PMID: 32044442; PMCID: PMC8725607; DOI: 10.1016/j.envint.2020.105506;
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Hickson LJ, Langhi Prata LGP, Bobart SA, Evans TK, Giorgadze N, Hashmi SK, Herrmann SM, Jensen MD, Jia Q, Jordan KL, Kellogg TA, Khosla S, Koerber DM, Lagnado AB, Lawson DK, LeBrasseur NK, Lerman LO, McDonald KM, McKenzie TJ, Passos JF, Pignolo RJ, Pirtskhalava T, Saadiq IM, Schaefer KK, Textor SC, Victorelli SG, Volkman TL, Xue A, Wentworth MA, Wissler Gerdes EO, Allison DB, Dickinson SL, Ejima K, Atkinson EJ, Lenburg M, Zhu Y, Tchkonia T, Kirkland JL. Corrigendum to 'Senolytics decrease senescent cells in humans: Preliminary report from a clinical trial of Dasatinib plus Quercetin in individuals with diabetic kidney disease' EBioMedicine 47 (2019) 446-456. EBioMedicine. 2020 Feb; 52:102595. PMID: 31982828; PMCID: PMC6994619; DOI: 10.1016/j.ebiom.2019.12.004;
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Duclos GE, Teixeira VH, Autissier P, Gesthalter YB, Reinders-Luinge MA, Terrano R, Dumas YM, Liu G, Mazzilli SA, Brandsma CA, van den Berge M, Janes SM, Timens W, Lenburg ME, Spira A, Campbell JD, Beane J. Characterizing smoking-induced transcriptional heterogeneity in the human bronchial epithelium at single-cell resolution. Sci Adv. 2019 12; 5(12):eaaw3413.View Related Profiles. PMID: 31844660; PMCID: PMC6905872; DOI: 10.1126/sciadv.aaw3413;
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Corbett SE, Nitzberg M, Moses E, Kleerup E, Wang T, Perdomo C, Perdomo C, Liu G, Xiao X, Liu H, Elashoff DA, Brooks DR, O'Connor GT, Dubinett SM, Spira A, Lenburg ME. Gene Expression Alterations in the Bronchial Epithelium of e-Cigarette Users. Chest. 2019 10; 156(4):764-773.View Related Profiles. PMID: 31233743; PMCID: PMC6859252; DOI: 10.1016/j.chest.2019.05.022;
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Hijazi K, Malyszko B, Steiling K, Xiao X, Liu G, Alekseyev YO, Dumas YM, Hertsgaard L, Jensen J, Hatsukami D, Brooks DR, O'Connor G, Beane J, Lenburg ME, Spira A. Tobacco-Related Alterations in Airway Gene Expression are Rapidly Reversed Within Weeks Following Smoking-Cessation. Sci Rep. 2019 05 06; 9(1):6978.View Related Profiles. PMID: 31061400; PMCID: PMC6502805; DOI: 10.1038/s41598-019-43295-3;
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Faiz A, Steiling K, Roffel MP, Postma DS, Spira A, Lenburg ME, Borggrewe M, Eijgenraam TR, Jonker MR, Koppelman GH, Pouwels SD, Liu G, Alekseyev YO, Lam S, Hiemstra PS, Sterk PJ, Timens W, Brandsma CA, Heijink IH, van den Berge M. Effect of long-term corticosteroid treatment on microRNA and gene-expression profiles in COPD. Eur Respir J. 2019 04; 53(4).View Related Profiles. PMID: 30846474
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Beane JE, Mazzilli SA, Campbell JD, Duclos G, Krysan K, Moy C, Perdomo C, Schaffer M, Liu G, Zhang S, Liu H, Vick J, Dhillon SS, Platero SJ, Dubinett SM, Stevenson C, Reid ME, Lenburg ME, Spira AE. Molecular subtyping reveals immune alterations associated with progression of bronchial premalignant lesions. Nat Commun. 2019 04 23; 10(1):1856.View Related Profiles. PMID: 31015447; PMCID: PMC6478943; DOI: 10.1038/s41467-019-09834-2;
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Billatos E, Faiz A, Gesthalter Y, LeClerc A, Alekseyev YO, Xiao X, Liu G, Ten Hacken NHT, Heijink IH, Timens W, Brandsma CA, Postma DS, van den Berge M, Spira A, Lenburg ME. Impact of acute exposure to cigarette smoke on airway gene expression. Physiol Genomics. 2018 09 01; 50(9):705-713.View Related Profiles. PMID: 29932825; PMCID: PMC6172616; DOI: 10.1152/physiolgenomics.00092.2017;
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Mazzilli SA, Zhang S, Liu G, Lenburg M, Spira A, Beane J. Abstract B18: The carcinogen-induced NTCU model: A preclinical mouse model for lung cancer interception. Cancer Research. 2018; 78(10 suppl):B18. View Publication
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Boudewijn IM, Faiz A, Steiling K, van der Wiel E, Telenga ED, Hoonhorst SJM, Ten Hacken NHT, Brandsma CA, Kerstjens HAM, Timens W, Heijink IH, Jonker MR, de Bruin HG, Sebastiaan Vroegop J, Pasma HR, Boersma WG, Wielders P, van den Elshout F, Mansour K, Spira A, Lenburg ME, Guryev V, Postma DS, van den Berge M. Nasal gene expression differentiates COPD from controls and overlaps bronchial gene expression. Respir Res. 2017 12 21; 18(1):213.View Related Profiles. PMID: 29268739; PMCID: PMC5740586; DOI: 10.1186/s12931-017-0696-5;
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Ong J, Timens W, Rajendran V, Algra A, Spira A, Lenburg ME, Campbell JD, van den Berge M, Postma DS, van den Berg A, Kluiver J, Brandsma CA. Identification of transforming growth factor-beta-regulated microRNAs and the microRNA-targetomes in primary lung fibroblasts. PLoS One. 2017; 12(9):e0183815.View Related Profiles. PMID: 28910321; PMCID: PMC5599028; DOI: 10.1371/journal.pone.0183815;
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Beane J, Mazzilli SA, Tassinari AM, Liu G, Zhang X, Liu H, Buncio AD, Dhillon SS, Platero SJ, Lenburg ME, Reid ME, Lam S, Spira AE. Detecting the Presence and Progression of Premalignant Lung Lesions via Airway Gene Expression. Clin Cancer Res. 2017 Sep 01; 23(17):5091-5100.View Related Profiles. PMID: 28533227; PMCID: PMC7404813; DOI: 10.1158/1078-0432.CCR-16-2540;
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Hu Z, Mao JH, Curtis C, Huang G, Gu S, Heiser L, Lenburg ME, Korkola JE, Bayani N, Samarajiwa S, Seoane JA, Dane MA, Esch A, Feiler HS, Wang NJ, Hardwicke MA, Laquerre S, Jackson J, Wood KW, Weber B, Spellman PT, Aparicio S, Wooster R, Caldas C, Gray JW. Erratum to: Genome co-amplification upregulates a mitotic gene network activity that predicts outcome and response to mitotic protein inhibitors in breast cancer. Breast Cancer Res. 2017 02 09; 19(1):17. PMID: 28183333; PMCID: PMC5301377; DOI: 10.1186/s13058-017-0809-6;
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Beane JE, Mazzilli SA, Campbell J, Moy C, Schaffer M, Perdomo C, Jenkins D, Liu G, Zhang S, Liu H, Vick J, Johnson E, Platero S, Lenburg ME, Reid M, Singh Dhillon S, Spira A. Abstract 5002: Premalignant squamous cell lung carcinoma lesions have distinct molecular subtypes associated with histologic progression. Cancer Research. 2017; 77(13 suppl):5002. View Publication
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Ong J, Timens W, Rajendran V, Algra A, Spira A, Lenburg ME, Campbell J, van den Berge M, Postma D, van den Berg A, Kluvier J, Brandsma CA. ERS International Congress 2017 abstracts. Target gene identification of TGF-ß-induced miR-455-3p and miR-21-3p in lung fibroblasts. 2017. View Publication
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Duclos GE, Campbell JD, Gesthalther Y, Autissier P, Dumas YM, Terrano R, Liu G, Lenburg ME, Spira A, Beane J. Abstract 1433: Single cell RNA sequencing reveals smoking-associated alterations in bronchial airway epithelial subpopulations. Cancer Research. 2017; 77(13 suppl):1433. View Publication
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Drizik E, Corbett S, Vermeulen R, Dai Y, Hu W, Lenburg ME, Ren D, Duan H, Niu Y, Xu J, Fu W, Meliefste K, Zhou B, Yang JF, Ye M, Jia X, Meng T, Bin P, Zheng Y, Silverman D, Rothman N, Spira A, Lan Q. Abstract 4256: Impact of diesel engine exhaust exposure on the airway transcriptome. Cancer Research. 2017; 77(13 suppl):4256. View Publication
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Mazzilli SA, Tassinari A, Xiao X, Liu G, Singh Dhillon S, Johnson CS, Reid M, Lenburg M, Spira A, Beane J. Abstract 1252: A pre-clinical model for lung cancer interception: gene expression similarities between human and mouse bronchial premalignant lesions. Cancer Research. 2017; 77(13 suppl):1252. View Publication
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Lee HJ, Whitten P, Bhadra K, Dotson T, Hogarth DK, Benzaquen S, Pritchett M, Gordon J, Bedekar A, Esterle M, Smith K, Bianchi P, Lenburg ME, Spira A. Prospective Utility of a Bronchial Genomic Classifier for Lung Cancer Detection: Interim Results From a Multicenter Prospective Registry. Chest. 2017; 152(4):A625. View Publication
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Campbell J, Zhang X, Singh Dhillon S, Perdomo C, Mazzilli SA, Geshalter Y, Liu G, Zhang S, Lin H, Vick J, Moy C, Monti S, Johnson E, Meyerson M, Dubinett S, Platero S, Wilkerson M, Dalgard C, Lenburg ME, Reid M, Beane J, Spira A. Abstract 3259: The genomic landscape of premalignant lung squamous cell carcinoma lesions. Cancer Research. 2017; 77(13 suppl):3259. View Publication
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Vasilescu DM, Phillion AB, Tanabe N, Kinose D, Paige DF, Kantrowitz JJ, Liu G, Liu H, Fishbane N, Verleden SE, Vanaudenaerde BM, Lenburg M, Stevenson CS, Spira A, Cooper JD, Hackett TL, Hogg JC. Nondestructive cryomicro-CT imaging enables structural and molecular analysis of human lung tissue. J Appl Physiol (1985). 2017 Jan 01; 122(1):161-169.View Related Profiles. PMID: 27856720; PMCID: PMC6442661; DOI: 10.1152/japplphysiol.00838.2016;
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Kusko RL, Brothers JF, Tedrow J, Pandit K, Huleihel L, Perdomo C, Liu G, Juan-Guardela B, Kass D, Zhang S, Lenburg M, Martinez F, Quackenbush J, Sciurba F, Limper A, Geraci M, Yang I, Schwartz DA, Beane J, Spira A, Kaminski N. Integrated Genomics Reveals Convergent Transcriptomic Networks Underlying Chronic Obstructive Pulmonary Disease and Idiopathic Pulmonary Fibrosis. Am J Respir Crit Care Med. 2016 Oct 15; 194(8):948-960.View Related Profiles. PMID: 27104832; PMCID: PMC5067817; DOI: 10.1164/rccm.201510-2026OC;
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Moses E, Wang T, Corbett S, Jackson GR, Drizik E, Perdomo C, Perdomo C, Kleerup E, Brooks D, O'Connor G, Dubinett S, Hayden P, Lenburg ME, Spira A. Molecular Impact of Electronic Cigarette Aerosol Exposure in Human Bronchial Epithelium. Toxicol Sci. 2017 Jan; 155(1):248-257.View Related Profiles. PMID: 27701119; PMCID: PMC5216655; DOI: 10.1093/toxsci/kfw198;
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Lam S, Mandrekar SJ, Gesthalter Y, Allen Ziegler KL, Seisler DK, Midthun DE, Mao JT, Aubry MC, McWilliams A, Sin DD, Shaipanich T, Liu G, Johnson E, Bild A, Lenburg ME, Ionescu DN, Mayo J, Yi JE, Tazelaar H, Harmsen WS, Smith J, Spira AE, Beane J, Limburg PJ, Szabo E. A Randomized Phase IIb Trial of myo-Inositol in Smokers with Bronchial Dysplasia. Cancer Prev Res (Phila). 2016 Dec; 9(12):906-914.View Related Profiles. PMID: 27658890; PMCID: PMC5136333; DOI: 10.1158/1940-6207.CAPR-15-0254;
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Hu Z, Mao JH, Curtis C, Huang G, Gu S, Heiser L, Lenburg ME, Korkola JE, Bayani N, Samarajiwa S, Seoane JA, A Dane M, Esch A, Feiler HS, Wang NJ, Hardwicke MA, Laquerre S, Jackson J, W Wood K, Weber B, Spellman PT, Aparicio S, Wooster R, Caldas C, Gray JW. Genome co-amplification upregulates a mitotic gene network activity that predicts outcome and response to mitotic protein inhibitors in breast cancer. Breast Cancer Res. 2016 Jul 01; 18(1):70. PMID: 27368372; PMCID: PMC4930593; DOI: 10.1186/s13058-016-0728-y;
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Reed E, Bray D, Lam S, van den Berge M, Liu G, Zhang X, Alekseyev Y, Spira A, Lenburg M, Steiling K. Data-Driven Identification of Novel Molecular Subclasses of COPD. Chest. 2016; 150(4):916A. View Publication
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Imkamp K, Faiz A, van der Wiel E, Boudewijn IM, Koppelman GH, Brandsma CA, Kerstjens H, Timens W, Vroegop S, Pasma H, Boersma WG, Wielders P, van den Elshout F, Mansour K, Steiling K, Spira A, Lenburg M, Heijink IH, Postma D, van den Berge M. Effects of ICS/LABA treatment on hyperinflation and genome wide gene-expression in upper airway epithelium in severe COPD. European Respiratory Journal. 2016; 48(suppl 60):PA 1203. View Publication
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Hogarth DK, Dotson T, Lee H, Whitten P, Lenburg M. The Percepta Registry: A Prospective Registry to Evaluate Percepta Bronchial Genomic Classifier Patient Data. Chest. 2016; 150(4):1026A. View Publication
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Campbell JD, Perdomo C, Mazzilli SA, Geshalter Y, Singh Dhillon S, Liu G, Zhang S, Lin H, Vick J, Moy C, Johnson E, Meyerson M, Platero S, Lenburg M, Reid M, Spira A, Beane J. Abstract 895: Genomic characterization of premalignant lung squamous cell carcinoma lesions. Cancer Research. 2016; 76(14 suppl):895. View Publication
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Becker E, Lam S, van den Berge M, Liu G, Zhang X, Alekseyev Y, Spira A, Lenburg M, Steiling K. Predicting Lung Function Decline in COPD Using Bronchial Airway Gene Expression. Chest. 2016; 150(4):912A. View Publication
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Mazzilli SA, Tassinari A, Gethalter Y, Lui G, Pine M, Lam S, Reid M, Platero S, Lenburg ME, Spira A, Beane J . Abstract 896: The airway field of injury reflects gene expression changes associated with the presence of lung squamous premalignant lesions. Cancer Research. 2016; 76(14 suppl):896. View Publication
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Pavel A, Campbell J, Liu G, Zhang S, Liu H, Xiao J, Porta Smith K, Whitney D, Dubinett S, Elashoff D, Lenburg ME, Spira A. Abstract 1954: microRNA expression in bronchial epithelium for lung cancer detection. Cancer Research. 2016; 76(14 suppl):1954. View Publication
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Park SJ, Walser T, Tran LM, Perdomo C, Wang T, Long-Sheng H, Pagano P, Li R, Jing Z, Liclican E, Larsen JE, Krysan K, Fishbein MC, Minna J, Lenburg ME, Spira A, Dubinett SM. The biological impact of e-cigarettes on airway epithelial cell transformation and gene expression. Journal of Thoracic Oncology. 2016; 11(2):S35-S36. View Publication
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Vasilescu DM, Phillion AB, Tanabe N, Kinose D, Paige DF, Kantrowitz J, Liu G, Liu H, Fishbane N, Verleden SE, Vanaudenaerde BM, Leburg ME, Stevenson CS, Spira A, Cooper JD, Hackett TL, Hogg JC. Non-destructive cryo micro CT imaging enables structural and molecular analysis of human lung tissue. Journal of Applied Physiology. 2016; 122(1). View Publication
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Wang TW, Vermeulen RC, Hu W, Liu G, Xiao X, Alekseyev Y, Xu J, Reiss B, Steiling K, Downward GS, Silverman DT, Wei F, Wu G, Li J, Lenburg ME, Rothman N, Spira A, Lan Q. Gene-expression profiling of buccal epithelium among non-smoking women exposed to household air pollution from smoky coal. Carcinogenesis. 2015 Dec; 36(12):1494-501.View Related Profiles. PMID: 26468118; PMCID: PMC4675833; DOI: 10.1093/carcin/bgv150;
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Sze MA, Dimitriu PA, Suzuki M, McDonough JE, Campbell JD, Brothers JF, Erb-Downward JR, Huffnagle GB, Hayashi S, Elliott WM, Cooper J, Sin DD, Lenburg ME, Spira A, Mohn WW, Hogg JC. Host Response to the Lung Microbiome in Chronic Obstructive Pulmonary Disease. Am J Respir Crit Care Med. 2015 Aug 15; 192(4):438-45.View Related Profiles. PMID: 25945594; PMCID: PMC4595667; DOI: 10.1164/rccm.201502-0223OC;
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Silvestri GA, Vachani A, Whitney D, Elashoff M, Porta Smith K, Ferguson JS, Parsons E, Mitra N, Brody J, Lenburg ME, Spira A. A Bronchial Genomic Classifier for the Diagnostic Evaluation of Lung Cancer. N Engl J Med. 2015 Jul 16; 373(3):243-51.View Related Profiles. PMID: 25981554; PMCID: PMC4838273; DOI: 10.1056/NEJMoa1504601;
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Whitney DH, Elashoff MR, Porta-Smith K, Gower AC, Vachani A, Ferguson JS, Silvestri GA, Brody JS, Lenburg ME, Spira A. Derivation of a bronchial genomic classifier for lung cancer in a prospective study of patients undergoing diagnostic bronchoscopy. BMC Med Genomics. 2015; 8:18.View Related Profiles. PMID: 25944280; PMCID: PMC4434538; DOI: 10.1186/s12920-015-0091-3;
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Zhu Y, Tchkonia T, Pirtskhalava T, Gower AC, Ding H, Giorgadze N, Palmer AK, Ikeno Y, Hubbard GB, Lenburg M, O'Hara SP, LaRusso NF, Miller JD, Roos CM, Verzosa GC, LeBrasseur NK, Wren JD, Farr JN, Khosla S, Stout MB, McGowan SJ, Fuhrmann-Stroissnigg H, Gurkar AU, Zhao J, Colangelo D, Dorronsoro A, Ling YY, Barghouthy AS, Navarro DC, Sano T, Robbins PD, Niedernhofer LJ, Kirkland JL. The Achilles' heel of senescent cells: from transcriptome to senolytic drugs. Aging Cell. 2015 Aug; 14(4):644-58.View Related Profiles. PMID: 25754370; PMCID: PMC4531078; DOI: 10.1111/acel.12344;
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Christenson SA, Steiling K, van den Berge M, Hijazi K, Hiemstra PS, Postma DS, Lenburg ME, Spira A, Woodruff PG. Asthma-COPD overlap. Clinical relevance of genomic signatures of type 2 inflammation in chronic obstructive pulmonary disease. Am J Respir Crit Care Med. 2015 Apr 1; 191(7):758-66.View Related Profiles. PMID: 25611785; PMCID: PMC4407484; DOI: 10.1164/rccm.201408-1458OC;
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Pavel A, Campbell JD, Liu G, Zhang S, Liu H, Luo L, Xiao Ji, Porta Smith K, Whitney D, Dubinett S, Elashoff D, Lenburg ME, Spira A. Abstract 3077: Dysregulation of microRNA-mRNA regulatory networks in the bronchial airway epithelium of smokers with lung cancer. Cancer Research. 2015; 75(15 suppl):3077. View Publication
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Beane JE, Campbell J, Moy C, Perdomo C, Schaffer M, Mazzilli SA, Geshalter Y, Kantrowitz J, Zhang L, Jenkins D, Pine M, Singh Dhillon S, Liu G, Liu H, Zhang S, Vick J, Monti S, Johnson E, Platero S, Lenburg ME, Reid M, Spira A. Abstract 2878: Development of the pre-cancer genome atlas (PCGA) for squamous cell lung carcinoma. Cancer Research. 2015; 75(15 suppl):2878. View Publication
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Perez-Rogers JF, Gerrein J, Anderlind C, Kusko RL, Campbell JD, Wang TW, Porta Smith K, Whitney D, Spira A, Lenburg ME. Abstract A1-66: Leveraging Gene Expression in the Bronchial Airway to Develop a Nasal Biomarker for Early Detection of Lung Cancer. Cancer Research. 2015; 75(22 suppl 1). View Publication
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Vachani A, Silvestri G, Whitney D, Ferguson JS, Porta Smith K, Parson E, Brody J, Lenburg ME, Spira A. Prospective Validation of a Bronchial Genomic Classifier for Lung Cancer in Patients Undergoing Diagnostic Bronchoscopy: The AEGIS Trials. Chest. 2015; 148(4):544A. View Publication
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Billatos E, Gesthalter Y, Hacken N, Postma D, Heijink IH, Timens W, Brandsma CA, Faiz A, Berge M, Lenburg ME, Spira A. The Impact of Acute Smoking on Airway Gene-Expression. Chest. 2015; 148:746A. View Publication
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Perez-Rogers J, Gerrein J, Xiao X, Liu H, Kusko RL, Campbell J, Wang T, Alekseyev Y, Liu G, Porta Smith K, Whitney D, Spira A, Lenburg ME. Abstract 1574: Leveraging bronchial airway gene expression to develop a nasal biomarker for lung cancer detection. Cancer Research. 2015; 75(15 suppl):1574. View Publication
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Tassinari A, Zhang B, Steiling K, Whitney D, Porta Smith K, Lam S, Lenburg M, Spira A, Beane J. Abstract A2-63: Airway gene-coexpression network rewiring in the presence of bronchial dysplasia and lung cancer. Cancer Research. 2015; 75(22 suppl 1):A63. View Publication
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Mazzilli SA, Liu G, Zhang X, Si H, Lam S, Lenburg ME, Spira A, Beane JE. Abstract A11: Airway gene expression indicates an increase in oxidative phosphorylation in the field of injury of individuals with premalignant lesions. Cancer Prevention Research. 2015; 8(10 suppl):A11. View Publication
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Park SJ, Walser T, Tran LM, Perdomo C, Wang T, Long-Sheng H, Pagano P, Liclican E, Larsen JE, Krysan K, Fishbein MC, Minna J, Lenburg ME, Spira A, Dubinett S. Abstract B22: The role of e-cigarette exposure on pulmonary epithelial cell transformation. Cancer Prevention Research. 2015; 8(10 suppl):B22. View Publication
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Faiz A, Borggrewe M, Postma D, Steiling K, Spira A, Lenburg ME, Jonker M, Koppelman GH, Hiemstra PS, Sterk P, Timens W, Brandsma CA, Van den Berge M, Heijink IH. MiR-320d: A novel anti-inflammatory miRNA up regulated by corticosteroids. European Respiratory Journal. 2015; 46(suppl 59). View Publication
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Campbell JD, Liu G, Luo L, Xiao J, Gerrein J, Juan-Guardela B, Tedrow J, Alekseyev YO, Yang IV, Correll M, Geraci M, Quackenbush J, Sciurba F, Schwartz DA, Kaminski N, Johnson WE, Monti S, Spira A, Beane J, Lenburg ME. Assessment of microRNA differential expression and detection in multiplexed small RNA sequencing data. RNA. 2015 Feb; 21(2):164-71.View Related Profiles. PMID: 25519487; PMCID: PMC4338344; DOI: 10.1261/rna.046060.114;
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Lamontagne M, Timens W, Hao K, Bossé Y, Laviolette M, Steiling K, Campbell JD, Couture C, Conti M, Sherwood K, Hogg JC, Brandsma CA, van den Berge M, Sandford A, Lam S, Lenburg ME, Spira A, Paré PD, Nickle D, Sin DD, Postma DS. Genetic regulation of gene expression in the lung identifies CST3 and CD22 as potential causal genes for airflow obstruction. Thorax. 2014 Nov; 69(11):997-1004.View Related Profiles. PMID: 25182044; DOI: 10.1136/thoraxjnl-2014-205630;
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Vucic EA, Chari R, Thu KL, Wilson IM, Cotton AM, Kennett JY, Zhang M, Lonergan KM, Steiling K, Brown CJ, McWilliams A, Ohtani K, Lenburg ME, Sin DD, Spira A, Macaulay CE, Lam S, Lam WL. DNA methylation is globally disrupted and associated with expression changes in chronic obstructive pulmonary disease small airways. Am J Respir Cell Mol Biol. 2014 May; 50(5):912-22.View Related Profiles. PMID: 24298892; PMCID: PMC4068945; DOI: 10.1165/rcmb.2013-0304OC;
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Ooi AT, Gower AC, Zhang KX, Vick JL, Hong L, Nagao B, Wallace WD, Elashoff DA, Walser TC, Dubinett SM, Pellegrini M, Lenburg ME, Spira A, Gomperts BN. Molecular profiling of premalignant lesions in lung squamous cell carcinomas identifies mechanisms involved in stepwise carcinogenesis. Cancer Prev Res (Phila). 2014 May; 7(5):487-95.View Related Profiles. PMID: 24618292; PMCID: PMC4059064; DOI: 10.1158/1940-6207.CAPR-13-0372;
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Wolf DM, Lenburg ME, Yau C, Boudreau A, van 't Veer LJ. Gene co-expression modules as clinically relevant hallmarks of breast cancer diversity. PLoS One. 2014; 9(2):e88309. PMID: 24516633; PMCID: PMC3917875; DOI: 10.1371/journal.pone.0088309;
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Krysan K, Kusko R, Grogan T, O'Hearn J, Reckamp KL, Walser TC, Garon EB, Lenburg ME, Sharma S, Spira AE, Elashoff D, Dubinett SM. PGE2-driven expression of c-Myc and oncomiR-17-92 contributes to apoptosis resistance in NSCLC. Mol Cancer Res. 2014 May; 12(5):765-74.View Related Profiles. PMID: 24469837; PMCID: PMC4020971; DOI: 10.1158/1541-7786.MCR-13-0377;
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Tassinari A, Whitney D, Porta Smith K, Lenburg ME, Spira A, Beane J. Abstract 1414: Race-associated variation in the airway transcriptome response to cigarette smoke. Cancer Research. 2014; 74(19 suppl):1414. View Publication
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Jiwani A, Maple E, Schnall M, Mahon I, Apgar C, Browning R, More K, Morris M, Parrish JS, Atwood C, Battaile J, Garshick E, Gatsonis C, Goldstein R, Kieth R, Lenburg ME, Reid M, Remick D, Vachani A, Wistuba I, Massion P, Dubinett S, Elashoff D, Duan F, Spira A. Detection and Validation of Molecular Biomarkers for the Early Detection of Lung Cancer Among Military and Veteran Populations: The DECAMP Consortium. Chest. 2014; 146(4):590A. View Publication
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Hijazi K, Malyszko B, Zhang X, Liu G. Alekseyev Y, Dumas YM, Hertsgaard L, Jenson J, Rhode C, Hatsukami D, Hecht SS, Brooks DR, O'Connors G, Lenburg M, Steiling K, Spira A. Abstract B07: Nasal epithelial gene expression profiles reflect dynamic biological response to smoking cessation. Cancer Prevention Research. 2014; 5(11 suppl):B07. View Publication
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Beane JE, Hijazi K, Steiling K, Liu G, Zhang S, Lam S, Lenburg ME. Abstract A27: Airway molecular alterations associated with premalignant lesion progression and lung cancer development. Cancer Prevention Research. 2014; 5(11 suppl):A27. View Publication
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Kusko RL, LeClerc A, Swahn S, Lenburg ME, Spira A, Alekseyev Y. Comparison of Illumina and Ion Torrent RNA-Sequencing and Microarray-based approaches for Profiling the Transcriptome. Journal of biomolecular techniques: JBT. 2014; 25(suppl):s14.
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Park SJ, Walser T, Perdomo C, Wang T, Pagano PC, Liclican E, Krysan K, Larsen JE, Minna J, Lenburg ME, Spira A, Dubinett SM. Abstract B16: The effect of e-cigarette exposure on airway epithelial cell gene expression and transformation. Clinical Cancer Research. 2014; 20(2 suppl):B16. View Publication
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Kusko RL, Garrison C, Wang T, Campbell J, Perez-Rogers J, Luo L, Beane J, Liu G, Kadara H, Belinsky S, Lenburg ME, Spira A. Abstract 3554: Gene and miRNA expression networks specific to never smoker lung adenocarcinoma. Cancer Research. 2014; 74(19 suppl):3554. View Publication
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Kusko RL, Anderlind C, Wang G, Zhang S, Wallace WD, Wasler T, Ebright MI, Garcia MM, Eisenberg R, Lee G, Liu G, Elashoff D, Kalhor N, Moran CA, Mehran RJ, Fujimoto J, Massion P, Dubinett S, Wistuba I, Lenburg ME, Kadara H, Spira A. Abstract 2352: Mapping the airway-wide molecular field of injury in smokers with lung cancer. Cancer Research. 2014; 74(19 suppl):2352. View Publication
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Pavel A, Campbell J, Liu G, Zhang S, Liu H, Dubinett S, Elashoff D, Porta Smith K, Whitney D, Lenburg ME, Spira A. Abstract 1485: Biomarker development for lung cancer diagnosis using integrative microRNA and gene expression networks. Cancer Research. 2014; 74(19 suppl):1485. View Publication
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Park SJ, Walser T, Perdomo C, Wang T, Hong LS, Pagano PC, Liclican E, Krysan K, Larsen JE, Fishbein MC, Minna J, Lenburg ME, Spira A, Dubinett SM. Abstract 932: The impact of e-cigarette exposure on pulmonary epithelium gene expression and transformation. Cancer Research. 2014; 74(19 suppl):932. View Publication
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Christenson SA, Brandsma CA, Campbell JD, Knight DA, Pechkovsky DV, Hogg JC, Timens W, Postma DS, Lenburg M, Spira A. miR-638 regulates gene expression networks associated with emphysematous lung destruction. Genome Med. 2013; 5(12):114.View Related Profiles. PMID: 24380442; PMCID: PMC3971345; DOI: 10.1186/gm519;
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Perdomo C, Campbell JD, Gerrein J, Tellez CS, Garrison CB, Walser TC, Drizik E, Si H, Gower AC, Vick J, Anderlind C, Jackson GR, Mankus C, Schembri F, O'Hara C, Gomperts BN, Dubinett SM, Hayden P, Belinsky SA, Lenburg ME, Spira A. MicroRNA 4423 is a primate-specific regulator of airway epithelial cell differentiation and lung carcinogenesis. Proc Natl Acad Sci U S A. 2013 Nov 19; 110(47):18946-51.View Related Profiles. PMID: 24158479; PMCID: PMC3839685; DOI: 10.1073/pnas.1220319110;
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van den Berge M, Steiling K, Timens W, Hiemstra PS, Sterk PJ, Heijink IH, Liu G, Alekseyev YO, Lenburg ME, Spira A, Postma DS. Airway gene expression in COPD is dynamic with inhaled corticosteroid treatment and reflects biological pathways associated with disease activity. Thorax. 2014 Jan; 69(1):14-23.View Related Profiles. PMID: 23925644; PMCID: PMC3888587; DOI: 10.1136/thoraxjnl-2012-202878;
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Steiling K, van den Berge M, Hijazi K, Florido R, Campbell J, Liu G, Xiao J, Zhang X, Duclos G, Drizik E, Si H, Perdomo C, Dumont C, Coxson HO, Alekseyev YO, Sin D, Pare P, Hogg JC, McWilliams A, Hiemstra PS, Sterk PJ, Timens W, Chang JT, Sebastiani P, O'Connor GT, Bild AH, Postma DS, Lam S, Spira A, Lenburg ME. A dynamic bronchial airway gene expression signature of chronic obstructive pulmonary disease and lung function impairment. Am J Respir Crit Care Med. 2013 May 1; 187(9):933-42.View Related Profiles. PMID: 23471465; PMCID: PMC3707363; DOI: 10.1164/rccm.201208-1449OC;
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Wang T, Campbell J, Kusko RL, Luo L, Tellez C, Liu G, Xiao J, Lenburg M, Belinsky S, Spira A. Abstract 1948: Shared and distinct microRNA-expression alterations in lung adenocarcinoma from smokers vs. nonsmokers. Cancer Research. 2013; 73(8 suppl):1948. View Publication
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Wang TW, Lan Q, Krystyna B, Rothman N, Florido R, Hu W, Steiling K, Liu G, Xiao J, Alekseyev Y, Xu J, Wei F, Hosgood HD, Reiss B, Downward G, Lenburg ME, Vermeulen R, Spira A. Abstract 112: Transcriptomic changes in the oral mucosal epithelium reflect the physiologic response to indoor burning of solid fuels. Cancer Research. 2013; 73(8 suppl):112. View Publication
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Wolf DM, Yau C, Boudreau A, Esserman L, Van Veer LJ, Lenburg ME. Abstract 5221: Co-expression modules as hallmarks of breast cancer survival and response. Cancer Research. 2013; 73(8 suppl):5221. View Publication
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Hijazi K, Malyszko B, Steiling K, Zhang X, Liu G, Alekseyev Y, Xiao J, Dumas M, Hertsgaard L, Jenson J, Rhode C, Isaksson R, Hatsukami D, Hecht S, Brooks D, Lenburg ME, Spira A. Abstract 4030: Nasal gene expression reflects the physiologic response to alternate tobacco products. Cancer Research. 2013; 73(8 suppl):4030. View Publication
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Ooi AT, Gower AC, Zhang K, Vick J, Long-Sheng H, Fishbein M, Nagao B, Wallace WD, Elashoff D, Lenburg ME, Dubinett S, Spira A, Gomperts B. Abstract 1063: Examining early events in carcinogenesis by profiling premalignant lesions in the airways of patients with lung squamous cell carcinomas. Cancer Research. 2013; 73(8 suppl):1063. View Publication
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Campbell JD, McDonough JE, Zeskind JE, Hackett TL, Pechkovsky DV, Brandsma CA, Suzuki M, Gosselink JV, Liu G, Alekseyev YO, Xiao J, Zhang X, Hayashi S, Cooper JD, Timens W, Postma DS, Knight DA, Lenburg ME, Hogg JC, Spira A. A gene expression signature of emphysema-related lung destruction and its reversal by the tripeptide GHK. Genome Med. 2012; 4(8):67.View Related Profiles. PMID: 22937864; PMCID: PMC4064320; DOI: 10.1186/gm368;
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Lee SY, Meier R, Furuta S, Lenburg ME, Kenny PA, Xu R, Bissell MJ. FAM83A confers EGFR-TKI resistance in breast cancer cells and in mice. J Clin Invest. 2012 Sep 4; 122(9):3211-20. PMID: 22886303; PMCID: PMC3428077; DOI: 10.1172/JCI60498;
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Horiuchi D, Kusdra L, Huskey NE, Chandriani S, Lenburg ME, Gonzalez-Angulo AM, Creasman KJ, Bazarov AV, Smyth JW, Davis SE, Yaswen P, Mills GB, Esserman LJ, Goga A. MYC pathway activation in triple-negative breast cancer is synthetic lethal with CDK inhibition. J Exp Med. 2012 Apr 9; 209(4):679-96. PMID: 22430491; PMCID: PMC3328367; DOI: 10.1084/jem.20111512;
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Steiling KA, van den Berge M, Hijazi K, Florido R, Campbell JD, Liu G, Xiao J, Zhang X, Alekseyev Y, Sin D, Pare PD, Sebastiani P, Mcwilliams AM, Hiemstra PS, Sterk PJ, Timens W, Postma D, O'Connor G, Lam S, Spira A, Lenburg ME. American Thoracic Society 2012 International Conference. A Bronchial Airway Gene Expression Signature Of COPD That Is Reflective Of Lung Tissue Disease Processes And Is Reversible With Inhaled Steroids. 2012. View Publication
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Campbell JD, Luo L, Xiao J, Liu G, Aleksyev Y, Elashoff D, Dubinett SM, Lenburg ME, Spira A. Abstract 3154: Sequencing of the small RNA transcriptome in cytologically normal bronchial airway epithelium of smokers with and without lung cancer. Cancer Research. 2012; 72(8 suppl):3154. View Publication
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Campbell JD, Luo L, Liu G, Xiao J, Gerrein J, Juan-Guardela B, Tedrow J, Aleksyev YO, Yang IV, Correll M, Geraci M, Quackenbush J, Sciurba FC, Schwartz DA, Kaminski N, Lenburg ME, Beane J, Spira A. Characterizing The Small RNA Transcriptome Associated With COPD And ILD Using Next Generation Sequencing. BMC proceedings. 2012; 6(6). View Publication
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Beane JE, Hijazi K, Liu G, Zhang X, Xiao J, Lam S, Lenburg ME, Spira A. Abstract 1607: Airway gene expression alterations associated with lung cancer chemoprevention using green tea extract. Cancer Research. 2012; 72(8 suppl):1607. View Publication
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Wang TW, Campbell JD, Luo L, Liu G, Xiao J, Lenburg ME, Belinsky SA, Spira A. Deep sequencing of the microRNA transcriptome in current, former, and never smokers with lung adenocarcinoma. BMC proceedings. 2012; 6(6). View Publication
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Ma J, Steiling KA, Campbell JD, Singh A, Malhotra D, Elliot WM, Lenburg ME, Hogg JC, Spira A, Biswal S. American Thoracic Society 2012 International Conference. Global Gene And MicroRNA Expression Profiling Identifies MicroRNA-Gene Regulatory Networks In The Lung Tissue Of Smokers With COPD. 2012. View Publication
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Brothers JF, Kusko RL, Liu G, Luo L, Juan-Guardela B, Tedrow J, Alekseyev Y, Yang IV, Correll M, Geraci M, Quackenbush J, Sciurba FC, Sebastiani P, Lenburg ME, Kaminski N, Schwartz DA, Spira A, Beane J. American Thoracic Society 2012 International Conference. Identification Of Lung Disease-Associated Novel Transcripts And Alternative Splicing By RNA-Sequencing. 2012. View Publication
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Brothers JF, Kusko RL, Liu G, Luo L, Juan-Guardela B, Tedrow J, Aleksyev Y, Yang IV, Correll M, Geraci M, Quackenbush J, Sciurba FC, Sebastiani P, Lenburg ME, Kaminski N, Schwartz DA, Spira A, Beane J . Moving beyond gene expression: identification of lung-disease-associated novel transcripts and alternative splicing by RNA sequencing. BMC proceedings. 2012; 6(6). View Publication
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Hijazi K, Malyszko B, Zhang X, Liu G, Alekseyev Y, Dumas YM, Hertsgaard L, Jensen J, Rhode C, Hatsukami D, Brook DR, O'Connor G, Lenburg ME, Steiling KA, Spira A. American Thoracic Society 2012 International Conference. Nasal Epithelial Gene Expression Profiles Reflect The Host Response To Smoking Cessation. 2012. View Publication
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Christenson SA, Brandsma CA, Hogg JC, Timens W, Postma D, Lenburg ME, Spira A. American Thoracic Society 2012 International Conference. MiR-638 Regulates Gene Expression Changes In Human Lung Fibroblasts. 2012. View Publication
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Kusko RL, Brothers JF, Liu G, Luo L, Juan-Guardela B, Tedrow JR, Aleksyev Y, Yang IV, Correll M, Geraci M, Quackenbush J, Sciurba FC, Lenburg ME, Schwartz DA, Beane J, Kaminski N, Spira A. American Thoracic Society 2012 International Conference. Comprehensive Genomic Profiling Of The Lung Transcriptome In Emphysema And IPF Using RNA-Seq. 2012. View Publication
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Lin Y, Zhang X, Sebastiani P, Beane J, Brooks D, O'Connor G, Lenburg ME, Spira A. American Thoracic Society 2012 International Conference. Upper Airway Gene Expression As A Biomarker Of Active And Secondhand Smoke Exposure. 2012. View Publication
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Dumont C, Steiling KA, O'Connor G, Zhang X, Liu G, Xiao J, Alekseyev Y, Campbell J, Sin D, Lam S, Coxson HO, Spira A, Lenburg ME. American Thoracic Society 2012 International Conference. Airway Gene Expression Is Associated With The Radiographic Extent Of Emphysema In COPD. 2012. View Publication
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Kusko RL, Brother JF, Liu G, Luo L, Juan-Guardela B, Tedrow J, Aleksyev Y, Yang IV, Correll M, Geraci M, Quackenbush J, Sciurba FC, Lenburg ME, Schwartz DA, Beane J, Kaminski N, Spira A. Comprehensive genomic profiling of the lung transcriptome in emphysema and idiopathic pulmonary fibrosis using RNA-Seq. BMC proceedings. 2012; 6(6). View Publication
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van den Berge M, Steiling KA, Timens W, Hiemstra PS, Sterk PJ, Liu G, Alexejev Y, Lenburg M, Spira A, Postma D. American Thoracic Society 2012 International Conference. Airway Gene Expression Is Dynamic With Inhaled Corticosteroid Treatment And Reflects Clinical Response In Patients With COPD. 2012. View Publication
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Whitney D, Luo J, Porta Smith K, Lenburg ME, Brody J, Ernst A, Vachani A, Ferguson JS, Silvestri G, Spira A. Bronchial Airway Gene-Expression Testing Improves the Diagnostic Yield of Bronchoscopy for Lung Cancer: Results of the AEGIS Trial. Chest. 2012; 142:1025A. View Publication
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Mukhtar R, Wolf DM, Tandon VJ, Zhu J, Lenburg ME, Campbell M. P4-09-19: PCNA+ Tumor Associated Macrophages Are Associated with M1 and M2 Gene Expression, and Confer Poor Prognosis in the Absence of Anti-Tumor Immune Environment. Cancer Research. 2012; 71(24 suppl). View Publication
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Esserman LJ, Berry DA, Cheang MC, Yau C, Perou CM, Carey L, DeMichele A, Gray JW, Conway-Dorsey K, Lenburg ME, Buxton MB, Davis SE, van't Veer LJ, Hudis C, Chin K, Wolf D, Krontiras H, Montgomery L, Tripathy D, Lehman C, Liu MC, Olopade OI, Rugo HS, Carpenter JT, Livasy C, Dressler L, Chhieng D, Singh B, Mies C, Rabban J, Chen YY, Giri D, Au A, Hylton N. Chemotherapy response and recurrence-free survival in neoadjuvant breast cancer depends on biomarker profiles: results from the I-SPY 1 TRIAL (CALGB 150007/150012; ACRIN 6657). Breast Cancer Res Treat. 2012 Apr; 132(3):1049-62. PMID: 22198468; PMCID: PMC3332388; DOI: 10.1007/s10549-011-1895-2;
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Beane J, Vick J, Schembri F, Anderlind C, Gower A, Campbell J, Luo L, Zhang XH, Xiao J, Alekseyev YO, Wang S, Levy S, Massion PP, Lenburg M, Spira A. Characterizing the impact of smoking and lung cancer on the airway transcriptome using RNA-Seq. Cancer Prev Res (Phila). 2011 Jun; 4(6):803-17.View Related Profiles. PMID: 21636547; PMCID: PMC3694393; DOI: 10.1158/1940-6207.CAPR-11-0212;
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Beane J, Gerrein J, Vick J, Gindin Y, Anderlind C, Levy S, Massion P, Schembri F, Lenburg ME, Spira A. Abstract 1987: RNA-seq of the bronchial airway transcriptome identifies novel gene and microRNA expression changes associated with smoking and lung cancer. Cancer Research. 2011; 70(8 suppl):1987. View Publication
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Anderlind C, Brothers JF, Lenburg M, Brody J, Spira A. American Journal of Respiratory and Critical Care Medicine. Gene Expression Profiles In Nasal Epithelium Differ Between Smokers With And Without Lung Cancer. 2011; 183:A1050. View Publication
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Goga A, Horiuchi D, Kusdra L, Chandriani S, Lenburg ME, Gonzalez-Angulo AM, Huskey NE, Creasman KJ, Davis SE, Mills GB, Esserman LJ. Synthetic-Lethality of Triple-Negative Breast Cancers Via the MYC Oncogene Pathway. Cancer Research. 2011; 70(24 suppl). View Publication
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Beane J, Vick J, Gindin Y, Anderlind C, Schembri F, Liu G, Wang S, Levy S, Massion P, Lenburg M, Spira A. American Thoracic Society 2011 International Conference. RNA-seq Identifies Novel Changes In The Airway Transcriptome Associated With Smoking And Lung Cancer. 2011. View Publication
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Lin Y, Zhang X, O'Connor GT, Brooks DR, Zhang S, Alekseyev Y, Sebastiani P, Lenburg M, Spira A. American Thoracic Society 2011 International Conference. Upper Airway Gene Expression As A Biomarker Of Environmental Tobacco Exposure. 2011. View Publication
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Wolf DM, Lenburg ME, Yau C, Boudreau A, Esserman L, Hylton N, van Veer LJ. Abstract LB-311: Combinatorial logic over breast cancer control modules predicts survival and chemotherapy response of ISPY1 breast cancer patients (CALGB 150007/150012; ACRIN 6657). Cancer Research. 2011; 71(8 suppl). View Publication
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Ooi AT, Mah VH, Nickerson DW, Gilbert J, Ha VL, Hegab AE, Horvath S, Alavi M, Maresh EL, Chia D, Gower AC, Lenburg LE, Spira A, Walser T, Wallace WD, Dubinett SM, Goodglick L, Gomperts B. Abstract 4299: Poor prognosis in smokers with non-small cell lung cancer correlates with the presence of a reparative progenitor cell population. Cancer Research. 2011; 70(8 suppl):4299. View Publication
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Steiling K, Van Den Berge M, Sebastiani P, Connor GO, Zhang X, Liu G, Xiao J, Alekseyev Y, Campbell J, Coxson HO, Hogg JC, Mcwilliams AM, Timens W, Hiemstra PS, Sterk PJ, Sin D, Postma D, Lam S, Lenburg ME, Spira A. Airway Gene Expression as a Molecular Phenotype of COPD. Proc Am Thorac Soc. 2011; 8.
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Steiling K, Ceron D, Campbell J, Xiao J, Zhang X, Liu G, Alekseyev Y, Mcwilliams AM, Hogg JC, Sebastiani P, O'Connor GT, Sin D, Coxson HO, Lam S, Lenburg ME, Spira A. American Thoracic Society 2011 International Conference. Airway Epithelial Gene Expression Patterns Associated With COPD Describe Potential Molecular Phenotypes Of Disease. 2011. View Publication
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Suzuki M, Zeskind JE, McDonough JE, Gosselink JV, Elliott WM, Hayashi S, Cooper JD, Lenburg ME, Spira A, Hogg JC. American Thoracic Society 2011 International Conference. Macrophage Polarization During Centrilobular Emphysematous Destruction In COPD. 2011. View Publication
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Brothers JF, Kusko RL, Luo L, Liu G, Juan-Guardela B, Tedrow J, Alekseyev Y, Yang IV, Correll M, Geraci M, Quackenbush J, Sciurba FC, Sebastiani P, Lenburg ME, Kaminski N, Schwartz DA, Spira A, Beane J. American Thoracic Society 2011 International Conference. Identifying Novel Transcripts And Alternative Splicing Associated With The ILD And COPD Lung Transcriptome Using MRNA-Seq. 2011. View Publication
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Gerrein J, Perdomo C, Campbell JD, Vick J, Gower AC, Anderlind C, Schembri F, Spira A, Lenburg ME. Abstract 3989: Discovery of a novel airway microRNA associated with lung cancer using next generation sequencing. Cancer Research. 2011; 71(8 suppl):3989. View Publication
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Kusko RL, Beane J, Brothers JF, Liu G, Luo L, Juan-Guardela B, Tedrow J, Aleksyev Y, Yang IV, Correll M, Geraci M, Quackenbush J, Sciurba FC, Lenburg ME, Schwartz DA. Kaminski N, Spira A. American Thoracic Society 2011 International Conference. Characterizing The Lung Disease Transcriptome With Next Generation Rna-Sequencing. 2011. View Publication
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Gibb WJ, Collisson E, Korkola J, Heiser LM, Sadanandam A, Kuo WL, Hu Z, Mao JH, Wang N, Bayani N, Billig J, Ziyad S, Lewis S, Feiler H, Jakkula L, Wolf DM, Lenburg M, Spellman PT, Gray JW. Abstract 1979: Algebraic factorization of gene expression profiles reveals subtype-specific drug sensitivities among 54 breast cancer cell lines. Cancer Research. 2011; 70(8 suppl):1979. View Publication
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DeMichele A, Yau C, Zhu J, Wuhfkuhle J, Lenburg ME, Buxton M, Davis S, Mies C, Livasy C, Chin K, Gray JW, Carey LA, Esserman L, Petricoin E. Comparison of Community and Central Her2 Assessment on Outcome of Neoadjuvant Chemotherapy in the I-SPY Trial. Cancer Research. 2011; 71(24 suppl). View Publication
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Boelens MC, Gustafson AM, Postma DS, Kok K, van der Vries G, van der Vlies P, Spira A, Lenburg ME, Geerlings M, Sietsma H, Timens W, van den Berg A, Groen HJ. A chronic obstructive pulmonary disease related signature in squamous cell lung cancer. Lung Cancer. 2011 May; 72(2):177-83.View Related Profiles. PMID: 20832896; DOI: 10.1016/j.lungcan.2010.08.014;
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Ooi AT, Mah V, Nickerson DW, Gilbert JL, Ha VL, Hegab AE, Horvath S, Alavi M, Maresh EL, Chia D, Gower AC, Lenburg ME, Spira A, Solis LM, Wistuba II, Walser TC, Wallace WD, Dubinett SM, Goodglick L, Gomperts BN. Presence of a putative tumor-initiating progenitor cell population predicts poor prognosis in smokers with non-small cell lung cancer. Cancer Res. 2010 Aug 15; 70(16):6639-48.View Related Profiles. PMID: 20710044; PMCID: PMC2924777; DOI: 10.1158/0008-5472.CAN-10-0455;
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Panchenko MP, Siddiquee Z, Dombkowski DM, Alekseyev YO, Lenburg ME, Walker JD, Macgillivray TE, Preffer FI, Stone JR. Protein kinase CK1alphaLS promotes vascular cell proliferation and intimal hyperplasia. Am J Pathol. 2010 Sep; 177(3):1562-72.View Related Profiles. PMID: 20696773; PMCID: PMC2928985; DOI: 10.2353/ajpath.2010.100327;
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Blick T, Hugo H, Widodo E, Waltham M, Pinto C, Mani SA, Weinberg RA, Neve RM, Lenburg ME, Thompson EW. Epithelial mesenchymal transition traits in human breast cancer cell lines parallel the CD44(hi/)CD24 (lo/-) stem cell phenotype in human breast cancer. J Mammary Gland Biol Neoplasia. 2010 Jun; 15(2):235-52. PMID: 20521089; DOI: 10.1007/s10911-010-9175-z;
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Gustafson AM, Soldi R, Anderlind C, Scholand MB, Qian J, Zhang X, Cooper K, Walker D, McWilliams A, Liu G, Szabo E, Brody J, Massion PP, Lenburg ME, Lam S, Bild AH, Spira A. Airway PI3K pathway activation is an early and reversible event in lung cancer development. Sci Transl Med. 2010 Apr 7; 2(26):26ra25.View Related Profiles. PMID: 20375364; PMCID: PMC3694402; DOI: 10.1126/scitranslmed.3000251;
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Salisbury Palomares KT, Gerstenfeld LC, Wigner NA, Lenburg ME, Einhorn TA, Morgan EF. Transcriptional profiling and biochemical analysis of mechanically induced cartilaginous tissues in a rat model. Arthritis Rheum. 2010 Apr; 62(4):1108-18.View Related Profiles. PMID: 20131271; PMCID: PMC2929815; DOI: 10.1002/art.27343;
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Hu Z, Huang G, Sadanandam A, Gu S, Lenburg ME, Pai M, Bayani N, Blakely EA, Gray JW, Mao JH. The expression level of HJURP has an independent prognostic impact and predicts the sensitivity to radiotherapy in breast cancer. Breast Cancer Res. 2010; 12(2):R18. PMID: 20211017; PMCID: PMC2879562; DOI: 10.1186/bcr2487;
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Cartwright MJ, Schlauch K, Lenburg ME, Tchkonia T, Pirtskhalava T, Cartwright A, Thomou T, Kirkland JL. Aging, depot origin, and preadipocyte gene expression. J Gerontol A Biol Sci Med Sci. 2010 Mar; 65(3):242-51. PMID: 20106964; PMCID: PMC2904595; DOI: 10.1093/gerona/glp213;
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Papageorgis P, Lambert AW, Ozturk S, Gao F, Pan H, Manne U, Alekseyev YO, Thiagalingam A, Abdolmaleky HM, Lenburg M, Thiagalingam S. Smad signaling is required to maintain epigenetic silencing during breast cancer progression. Cancer Res. 2010 Feb 1; 70(3):968-78.View Related Profiles. PMID: 20086175; PMCID: PMC2946209; DOI: 10.1158/0008-5472.CAN-09-1872;
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Gerrein J, Beane J, Vick J, Gindin Y, Anderlind C, Levy S, Massion P, Schembri FM, Lenburg ME, Spira A. American Thoracic Society 2010 International Conference. Next Generation Sequencing Of The Bronchial Airway Transcriptome Identifies Novel Gene And MicroRNA Changes Associated With Smoking And Lung-cancer. 2010. View Publication
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Steiling K, Ma J, Campbell JD. Malhotra D, Lenburg ME, Singh A, Elliott WM, Hogg JC, Spira A, Biswal S. American Thoracic Society 2010 International Conference. Alterations In Gene And MicroRNA Expression In The Lung Tissue Of Smokers With Chronic Obstructive Pulmonary Disease. 2010. View Publication
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Wulfkuhle JD, Lenburg ME, Pierobon M, Illi J, Zhu J, DeMichele A, Espina VA, Liotta LA, Esserman L, Petricoin E. Protein signal pathway mapping of human breast cancer from I-SPY: Correlations with response and genomic subtyping. Journal of Clinical Oncology. 2010; 28(15 suppl):10512. View Publication
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Brothers JF, Neumann S, Campbell JD, Zeskind J, Lenburg ME, Sebastiani P, McDonough JE, Pare PD, He J, Hogg JC, Kobor MS, Spira A. American Thoracic Society 2010 International Conference. The Role Of Promoter Methylation In Regulating The Expression Of Genes Associated With COPD Progression. 2010. View Publication
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Zhang X, Sebastiani P, Liu G, Schembri F, Zhang X, Dumas YM, Langer EM, Alekseyev Y, O'Connor GT, Brooks DR, Lenburg ME, Spira A. Similarities and differences between smoking-related gene expression in nasal and bronchial epithelium. Physiol Genomics. 2010 Mar 3; 41(1):1-8.View Related Profiles. PMID: 19952278; PMCID: PMC2841495; DOI: 10.1152/physiolgenomics.00167.2009;
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Steiling K, Kadar AY, Bergerat A, Flanigon J, Sridhar S, Shah V, Ahmad QR, Brody JS, Lenburg ME, Steffen M, Spira A. Comparison of proteomic and transcriptomic profiles in the bronchial airway epithelium of current and never smokers. PLoS One. 2009; 4(4):e5043.View Related Profiles. PMID: 19357784; PMCID: PMC2664466; DOI: 10.1371/journal.pone.0005043;
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Zhou J, Huang W, Tao R, Ibaragi S, Lan F, Ido Y, Wu X, Alekseyev YO, Lenburg ME, Hu GF, Luo Z. Inactivation of AMPK alters gene expression and promotes growth of prostate cancer cells. Oncogene. 2009 May 7; 28(18):1993-2002.View Related Profiles. PMID: 19347029; PMCID: PMC2679420; DOI: 10.1038/onc.2009.63;
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Zhu J, Sanborn JZ, Benz S, Szeto C, Hsu F, Kuhn RM, Karolchik D, Archie J, Lenburg ME, Esserman LJ, Kent WJ, Haussler D, Wang T. The UCSC Cancer Genomics Browser. Nat Methods. 2009 Apr; 6(4):239-40. PMID: 19333237; PMCID: PMC5027375; DOI: 10.1038/nmeth0409-239;
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Schembri F, Sridhar S, Perdomo C, Gustafson AM, Zhang X, Ergun A, Lu J, Liu G, Zhang X, Bowers J, Vaziri C, Ott K, Sensinger K, Collins JJ, Brody JS, Getts R, Lenburg ME, Spira A. MicroRNAs as modulators of smoking-induced gene expression changes in human airway epithelium. Proc Natl Acad Sci U S A. 2009 Feb 17; 106(7):2319-24.View Related Profiles. PMID: 19168627; PMCID: PMC2650144; DOI: 10.1073/pnas.0806383106;
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Anderlind C, Brothers JF, Daly BDT, Lenburg ME, Brody JS, Hinds A, Ebright MI, Fernando HC, Reardon C, O'Hara CJ, Spira A, Kathuria H. American Thoracic Society 2009 International Conference. Detection of Gene Expression Signatures in Tumor Free Lymph Node Tissue Predicts Prognosis in Non-Small Cell Lung Cancer (NSCLC). 2009. View Publication
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Christenson SA, Schembri FM, Sridhar S, Campbell J, Zhang X, Lenburg ME, Spira A. American Thoracic Society 2009 International Conference. Impact of Smoking on miRNA Expression in Buccal and Nasal Epithelium. 2009. View Publication
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Hu Z, Mao J, Huang G, Kuo W, Lenburg ME, Ziyad S, Korkola J, Bayani N, Wang N, Weber B, Gu S, Wooster R, Gray JW. A Systems Analysis of Mitotic Apparatus Inhibitors Defines a Response Network for Breast Cancer. Cancer Research. 2009; 69(24 suppl):2020. View Publication
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Beane JE, Gustafson A, Zhang S, Liu G, Lenburg ME, Bild A, Spira A. American Thoracic Society 2009 International Conference. Activation of Signaling Pathways in the Airway Epithelium of Never and Current Smokers. 2009. View Publication
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Blick T, Widodo E, Hugo HJ, Lenburg ME, Neve RM, Waltham M, Thompson E. Large scale analyses of human breast cancer cell lines provides leads for analysis of EMT in clinical breast cancer. Clinical and Experimental Metastasis. 2009; 26(7):934.
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Merritt WM, Lin YG, Han LY, Kamat AA, Spannuth WA, Schmandt R, Urbauer D, Pennacchio LA, Cheng JF, Nick AM, Deavers MT, Mourad-Zeidan A, Wang H, Mueller P, Lenburg ME, Gray JW, Mok S, Birrer MJ, Lopez-Berestein G, Coleman RL, Bar-Eli M, Sood AK. Dicer, Drosha, and outcomes in patients with ovarian cancer. N Engl J Med. 2008 Dec 18; 359(25):2641-50. PMID: 19092150; PMCID: PMC2710981; DOI: 10.1056/NEJMoa0803785;
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Sridhar S, Schembri F, Zeskind J, Shah V, Gustafson AM, Steiling K, Liu G, Dumas YM, Zhang X, Brody JS, Lenburg ME, Spira A. Smoking-induced gene expression changes in the bronchial airway are reflected in nasal and buccal epithelium. BMC Genomics. 2008; 9:259.View Related Profiles. PMID: 18513428; PMCID: PMC2435556; DOI: 10.1186/1471-2164-9-259;
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Blick T, Widodo E, Hugo H, Waltham M, Lenburg ME, Neve RM, Thompson EW. Epithelial mesenchymal transition traits in human breast cancer cell lines. Clin Exp Metastasis. 2008; 25(6):629-42. PMID: 18461285; DOI: 10.1007/s10585-008-9170-6;
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Tripathi A, King C, de la Morenas A, Perry VK, Burke B, Antoine GA, Hirsch EF, Kavanah M, Mendez J, Stone M, Gerry NP, Lenburg ME, Rosenberg CL. Gene expression abnormalities in histologically normal breast epithelium of breast cancer patients. Int J Cancer. 2008 Apr 1; 122(7):1557-66.View Related Profiles. PMID: 18058819
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Merritt WM, Lin Y, Han LY, Kamat AA, Spannuth WA, Schmandt R, Urbauer D, Pennacchio LA, Cheng JF, Zeidan A, Wang H, Mueller P, Lenburg ME, Gray JW, Mok SC, Birrer MJ, Lopez-Berestein G, Coleman RL, Bar-Eli M, Sood AK. Decreased expression of RNA interference machinery, Dicer and Drosha, is associated with poor outcome in ovarian cancer patients. New England Journal of Medicine. 2008.
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Yau C, Moore D, Fan E, Chu B, Lenburg ME, Snisky J, Waldman F, Esserman L, Park JW, Benz C. Defining new multi-gene classifiers and prognostic indicators for hormone receptor and triple negative breast cancers. Cancer biomarkers: section A of Disease markers. 2008; 4(3):140-141.
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Spira A, Beane JE, Shah V, Steiling K, Liu G, Schembri F, Gilman S, Dumas YM, Calner P, Sebastiani P, Sridhar S, Beamis J, Lamb C, Anderson T, Gerry N, Keane J, Lenburg ME, Brody JS. Airway epithelial gene expression in the diagnostic evaluation of smokers with suspect lung cancer. Nat Med. 2007 Mar; 13(3):361-6.View Related Profiles. PMID: 17334370
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Herbert A, Lenburg ME, Ulrich D, Gerry NP, Schlauch K, Christman MF. Open-access database of candidate associations from a genome-wide SNP scan of the Framingham Heart Study. Nat Genet. 2007 Feb; 39(2):135-6.View Related Profiles. PMID: 17262019
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Zhang X, Liu G, Lenburg ME, Spira A. Comparison of smoking-induced gene expression on Affymetrix Exon and 3'-based expression arrays. Genome Inform. 2007; 18:247-57.View Related Profiles. PMID: 18546492
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Spira A, Beane JE, Shah V, Steiling K, Liu G, Schembri F, Gilman S, Dumas YM, Calner P, Sebastiani P, Sridhar S, Beamis J, Lamb C, Anderson T, Gerry N, Keane J, Lenburg ME, Brody JS. Airway gene expression in smokers as a novel biomarker for lung cancer. Cancer Investigation. 2007; 25:51-52.
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Kirkland J, Cartwright M, Tchkonia T, Lenburg ME, Schlauch K, Pirtskhalava T, Cartwright A, Lopez M, Frampton G. International Journal of Obesity. Aging, fat depot origin, and preadipocyte expression profiles: setting the stage for fat tissue dysfunction. 2007.
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Tchkonia T, Lenburg M, Thomou T, Giorgadze N, Frampton G, Pirtskhalava T, Cartwright A, Cartwright M, Flanagan J, Karagiannides I, Gerry N, Forse RA, Tchoukalova Y, Jensen MD, Pothoulakis C, Kirkland JL. Identification of depot-specific human fat cell progenitors through distinct expression profiles and developmental gene patterns. Am J Physiol Endocrinol Metab. 2007 Jan; 292(1):E298-307. PMID: 16985259
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Herbert A, Gerry NP, McQueen MB, Heid IM, Pfeufer A, Illig T, Wichmann HE, Meitinger T, Hunter D, Hu FB, Colditz G, Hinney A, Hebebrand J, Koberwitz K, Zhu X, Cooper R, Ardlie K, Lyon H, Hirschhorn JN, Laird NM, Lenburg ME, Lange C, Christman MF. A common genetic variant is associated with adult and childhood obesity. Science. 2006 Apr 14; 312(5771):279-83.View Related Profiles. PMID: 16614226
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Kanefsky J, Lenburg M, Hai CM. Cholinergic receptor and cyclic stretch-mediated inflammatory gene expression in intact ASM. Am J Respir Cell Mol Biol. 2006 Apr; 34(4):417-25. PMID: 16339998; PMCID: PMC2644203; DOI: 10.1165/rcmb.2005-0326OC;
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Klings ES, Safaya S, Adewoye AH, Odhiambo A, Frampton G, Lenburg M, Gerry N, Sebastiani P, Steinberg MH, Farber HW. Differential gene expression in pulmonary artery endothelial cells exposed to sickle cell plasma. Physiol Genomics. 2005 May 11; 21(3):293-8.View Related Profiles. PMID: 15741505
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King C, Guo N, Frampton GM, Gerry NP, Lenburg ME, Rosenberg CL. Reliability and reproducibility of gene expression measurements using amplified RNA from laser-microdissected primary breast tissue with oligonucleotide arrays. J Mol Diagn. 2005 Feb; 7(1):57-64. PMID: 15681475; PMCID: PMC1867505; DOI: 10.1016/S1525-1578(10)60009-8;
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Kirkland J, Tchkonia T, Lenburg ME, Prabhu V, Giorgadze N, Pirtskhalava T, Thomou T, Forse A, Pothoulakis C, Becker K. Obesity research. Are different fat depots separate mini-organs?. 2005.
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Carson JP, Zhang N, Frampton GM, Gerry NP, Lenburg ME, Christman MF. Pharmacogenomic identification of targets for adjuvant therapy with the topoisomerase poison camptothecin. Cancer Res. 2004 Mar 15; 64(6):2096-104. PMID: 15026349
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Lenburg ME, Liou LS, Gerry NP, Frampton GM, Cohen HT, Christman MF. Previously unidentified changes in renal cell carcinoma gene expression identified by parametric analysis of microarray data. BMC Cancer. 2003 Nov 27; 3:31.View Related Profiles. PMID: 14641932; PMCID: PMC317310
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Lenburg ME, O'Shea EK. Genetic evidence for a morphogenetic function of the Saccharomyces cerevisiae Pho85 cyclin-dependent kinase. Genetics. 2001 Jan; 157(1):39-51. PMID: 11139490; PMCID: PMC1283135
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Lenburg ME, O'Shea EK. Signaling phosphate starvation. Trends Biochem Sci. 1996 Oct; 21(10):383-7. PMID: 8918192
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Anderson SJ, Lenburg M, Landau NR, Garcia JV. The cytoplasmic domain of CD4 is sufficient for its down-regulation from the cell surface by human immunodeficiency virus type 1 Nef. J Virol. 1994 May; 68(5):3092-101. PMID: 8151774; PMCID: PMC236799
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Aiken C, Konner J, Landau NR, Lenburg ME, Trono D. Nef induces CD4 endocytosis: requirement for a critical dileucine motif in the membrane-proximal CD4 cytoplasmic domain. Cell. 1994 Mar 11; 76(5):853-64. PMID: 8124721
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Lenburg ME, Landau NR. Vpu-induced degradation of CD4: requirement for specific amino acid residues in the cytoplasmic domain of CD4. J Virol. 1993 Dec; 67(12):7238-45. PMID: 8230446; PMCID: PMC238186
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Snyder RW, Lenburg ME, Seebaum AT, Grabel LB. Disruption of the cytoskeleton-extracellular matrix linkage promotes the accumulation of plasminogen activators in F9 derived parietal endoderm. Differentiation. 1992 Aug; 50(3):153-62. PMID: 1330791