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Sethi MK, Maccioni R, Hogan JD, Kawamura T, Repunte-Canonigo V, Chen J, Zaia J, Sanna PP. Comprehensive Glycomic and Proteomic Analysis of Mouse Striatum and Lateral Hypothalamus Following Repeated Exposures to Cocaine or Methamphetamine. Mol Cell Proteomics. 2024 Aug; 23(8):100803.View Related Profiles. PMID: 38880242; PMCID: PMC11324981; DOI: 10.1016/j.mcpro.2024.100803;
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Chelini G, Mirzapourdelavar H, Durning P, Baidoe-Ansah D, Sethi MK, O'Donovan SM, Klengel T, Balasco L, Berciu C, Boyer-Boiteau A, McCullumsmith R, Ressler KJ, Zaia J, Bozzi Y, Dityatev A, Berretta S. Focal clusters of peri-synaptic matrix contribute to activity-dependent plasticity and memory in mice. Cell Rep. 2024 May 28; 43(5):114112.View Related Profiles. PMID: 38676925; PMCID: PMC11251421; DOI: 10.1016/j.celrep.2024.114112;
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Hackett WE, Chang D, Carvalho L, Zaia J. RAMZIS: a bioinformatic toolkit for rigorous assessment of the alterations to glycoprotein composition that occur during biological processes. Bioinform Adv. 2024; 4(1):vbae012. PMID: 38384861; PMCID: PMC10879752; DOI: 10.1093/bioadv/vbae012;
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Li R, Xia C, Wu S, Downs MJ, Tong H, Tursumamat N, Zaia J, Costello CE, Lin C, Wei J. Direct and Detailed Site-Specific Glycopeptide Characterization by Higher-Energy Electron-Activated Dissociation Tandem Mass Spectrometry. Anal Chem. 2024 Jan 23; 96(3):1251-1258.View Related Profiles. PMID: 38206681; PMCID: PMC10885852; DOI: 10.1021/acs.analchem.3c04484;
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Wei J, Papanastasiou D, Kosmopoulou M, Smyrnakis A, Hong P, Tursumamat N, Klein JA, Xia C, Tang Y, Zaia J, Costello CE, Lin C. De novo glycan sequencing by electronic excitation dissociation MS2-guided MS3 analysis on an Omnitrap-Orbitrap hybrid instrument. Chem Sci. 2023 Jun 21; 14(24):6695-6704.View Related Profiles. PMID: 37350811; PMCID: PMC10284134; DOI: 10.1039/d3sc00870c;
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Hackett WE, Chang D, Carvalho L, Zaia J. RAMZIS: a bioinformatic toolkit for rigorous assessment of the alterations to glycoprotein structure that occur during biological processes. bioRxiv. 2023 Jun 01. PMID: 37398011; PMCID: PMC10312533; DOI: 10.1101/2023.05.30.542895;
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Chang D, Klein J, Hackett WE, Nalehua MR, Wan XF, Zaia J. Improving Statistical Certainty of Glycosylation Similarity between Influenza A Virus Variants Using Data-Independent Acquisition Mass Spectrometry. Mol Cell Proteomics. 2022 Nov; 21(11):100412. PMID: 36103992; PMCID: PMC9593740; DOI: 10.1016/j.mcpro.2022.100412;
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Lageveen-Kammeijer GSM, Rapp E, Chang D, Rudd PM, Kettner C, Zaia J. The minimum information required for a glycomics experiment (MIRAGE): reporting guidelines for capillary electrophoresis. Glycobiology. 2022 06 13; 32(7):580-587. PMID: 35348694
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Wu J, Chopra P, Boons GJ, Zaia J. Influence of saccharide modifications on heparin lyase III substrate specificities. Glycobiology. 2022 Mar 30; 32(3):208-217. PMID: 33822051; PMCID: PMC8966481; DOI: 10.1093/glycob/cwab023;
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Kawahara R, Chernykh A, Alagesan K, Bern M, Cao W, Chalkley RJ, Cheng K, Choo MS, Edwards N, Goldman R, Hoffmann M, Hu Y, Huang Y, Kim JY, Kletter D, Liquet B, Liu M, Mechref Y, Meng B, Neelamegham S, Nguyen-Khuong T, Nilsson J, Pap A, Park GW, Parker BL, Pegg CL, Penninger JM, Phung TK, Pioch M, Rapp E, Sakalli E, Sanda M, Schulz BL, Scott NE, Sofronov G, Stadlmann J, Vakhrushev SY, Woo CM, Wu HY, Yang P, Ying W, Zhang H, Zhang Y, Zhao J, Zaia J, Haslam SM, Palmisano G, Yoo JS, Larson G, Khoo KH, Medzihradszky KF, Kolarich D, Packer NH, Thaysen-Andersen M. Author Correction: Community evaluation of glycoproteomics informatics solutions reveals high-performance search strategies for serum glycopeptide analysis. Nat Methods. 2022 Jan; 19(1):130. PMID: 34893784; PMCID: PMC8748192; DOI: 10.1038/s41592-021-01368-0;
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Kawahara R, Chernykh A, Alagesan K, Bern M, Cao W, Chalkley RJ, Cheng K, Choo MS, Edwards N, Goldman R, Hoffmann M, Hu Y, Huang Y, Kim JY, Kletter D, Liquet B, Liu M, Mechref Y, Meng B, Neelamegham S, Nguyen-Khuong T, Nilsson J, Pap A, Park GW, Parker BL, Pegg CL, Penninger JM, Phung TK, Pioch M, Rapp E, Sakalli E, Sanda M, Schulz BL, Scott NE, Sofronov G, Stadlmann J, Vakhrushev SY, Woo CM, Wu HY, Yang P, Ying W, Zhang H, Zhang Y, Zhao J, Zaia J, Haslam SM, Palmisano G, Yoo JS, Larson G, Khoo KH, Medzihradszky KF, Kolarich D, Packer NH, Thaysen-Andersen M. Community evaluation of glycoproteomics informatics solutions reveals high-performance search strategies for serum glycopeptide analysis. Nat Methods. 2021 11; 18(11):1304-1316. PMID: 34725484; PMCID: PMC8566223; DOI: 10.1038/s41592-021-01309-x;
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Chang D, Klein JA, Nalehua MR, Hackett WE, Zaia J. Data-independent acquisition mass spectrometry for site-specific glycoproteomics characterization of SARS-CoV-2 spike protein. Anal Bioanal Chem. 2021 Dec; 413(29):7305-7318. PMID: 34635934; PMCID: PMC8505113; DOI: 10.1007/s00216-021-03643-7;
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Hackett WE, Zaia J. The Need for Community Standards to Enable Accurate Comparison of Glycoproteomics Algorithm Performance. Molecules. 2021 Aug 06; 26(16). PMID: 34443345; PMCID: PMC8398183; DOI: 10.3390/molecules26164757;
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Maciej-Hulme ML, Dubaissi E, Shao C, Zaia J, Amaya E, Flitsch SL, Merry CLR. Selective Inhibition of Heparan Sulphate and Not Chondroitin Sulphate Biosynthesis by a Small, Soluble Competitive Inhibitor. Int J Mol Sci. 2021 Jun 29; 22(13). PMID: 34209670; PMCID: PMC8269443; DOI: 10.3390/ijms22136988;
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Hogan JD, Wu J, Klein JA, Lin C, Carvalho L, Zaia J. GAGrank: Software for Glycosaminoglycan Sequence Ranking Using a Bipartite Graph Model. Mol Cell Proteomics. 2021; 20:100093. PMID: 33992776; PMCID: PMC8214146; DOI: 10.1016/j.mcpro.2021.100093;
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Chang D, Zaia J. Methods to improve quantitative glycoprotein coverage from bottom-up LC-MS data. Mass Spectrom Rev. 2022 Nov; 41(6):922-937. PMID: 33764573
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Wang M, Shajahan A, Pepi LE, Azadi P, Zaia J. Glycoproteomic Sample Processing, LC-MS, and Data Analysis Using GlycReSoft. Curr Protoc. 2021 Mar; 1(3):e84. PMID: 33761173; PMCID: PMC8349174; DOI: 10.1002/cpz1.84;
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Chopra P, Joshi A, Wu J, Lu W, Yadavalli T, Wolfert MA, Shukla D, Zaia J, Boons GJ. The 3-O-sulfation of heparan sulfate modulates protein binding and lyase degradation. Proc Natl Acad Sci U S A. 2021 01 19; 118(3). PMID: 33441484; PMCID: PMC7826381; DOI: 10.1073/pnas.2012935118;
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Yang Y, Ahn J, Raghunathan R, Kallakury BV, Davidson B, Kennedy ZB, Zaia J, Goldman R. Expression of the Extracellular Sulfatase SULF2 Affects Survival of Head and Neck Squamous Cell Carcinoma Patients. Front Oncol. 2020; 10:582827.View Related Profiles. PMID: 33585200; PMCID: PMC7873738; DOI: 10.3389/fonc.2020.582827;
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Chang D, Hackett WE, Zhong L, Wan XF, Zaia J. Measuring Site-specific Glycosylation Similarity between Influenza a Virus Variants with Statistical Certainty. Mol Cell Proteomics. 2020 Sep; 19(9):1533-1545. PMID: 33451734
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Torres-Arancivia CM, Chang D, Hackett WE, Zaia J, Connors LH. Glycosylation of Serum Clusterin in Wild-Type Transthyretin-Associated (ATTRwt) Amyloidosis: A Study of Disease-Associated Compositional Features Using Mass Spectrometry Analyses. Biochemistry. 2020 11 17; 59(45):4367-4378.View Related Profiles. PMID: 33141553; PMCID: PMC8082438; DOI: 10.1021/acs.biochem.0c00590;
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Chang D, Zaia J. Why Glycosylation Matters in Building a Better Flu Vaccine. Mol Cell Proteomics. 2019 Dec; 18(12):2348-2358. PMID: 33451453
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Klein J, Zaia J. psims - A Declarative Writer for mzML and mzIdentML for Python. Mol Cell Proteomics. 2019 Mar; 18(3):571-575. PMID: 33431130
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Raghunathan R, Sethi MK, Klein JA, Zaia J. Proteomics, Glycomics, and Glycoproteomics of Matrisome Molecules. Mol Cell Proteomics. 2019 Nov; 18(11):2138-2148.View Related Profiles. PMID: 33451368
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De Leoz MLA, Duewer DL, Fung A, Liu L, Yau HK, Potter O, Staples GO, Furuki K, Frenkel R, Hu Y, Sosic Z, Zhang P, Altmann F, Grunwald-Grube C, Shao C, Zaia J, Evers W, Pengelley S, Suckau D, Wiechmann A, Resemann A, Jabs W, Beck A, Froehlich JW, Huang C, Li Y, Liu Y, Sun S, Wang Y, Seo Y, An HJ, Reichardt NC, Ruiz JE, Archer-Hartmann S, Azadi P, Bell L, Lakos Z, An Y, Cipollo JF, Pucic-Bakovic M, Štambuk J, Lauc G, Li X, Wang PG, Bock A, Hennig R, Rapp E, Creskey M, Cyr TD, Nakano M, Sugiyama T, Leung PA, Link-Lenczowski P, Jaworek J, Yang S, Zhang H, Kelly T, Klapoetke S, Cao R, Kim JY, Lee HK, Lee JY, Yoo JS, Kim SR, Suh SK, de Haan N, Falck D, Lageveen-Kammeijer GSM, Wuhrer M, Emery RJ, Kozak RP, Liew LP, Royle L, Urbanowicz PA, Packer NH, Song X, Everest-Dass A, Lattová E, Cajic S, Alagesan K, Kolarich D, Kasali T, Lindo V, Chen Y, Goswami K, Gau B, Amunugama R, Jones R, Stroop CJM, Kato K, Yagi H, Kondo S, Yuen CT, Harazono A, Shi X, Magnelli PE, Kasper BT, Mahal L, Harvey DJ, O'Flaherty R, Rudd PM, Saldova R, Hecht ES, Muddiman DC, Kang J, Bhoskar P, Menard D, Saati A, Merle C, Mast S, Tep S, Truong J, Nishikaze T, Sekiya S, Shafer A, Funaoka S, Toyoda M, de Vreugd P, Caron C, Pradhan P, Tan NC, Mechref Y, Patil S, Rohrer JS, Chakrabarti R, Dadke D, Lahori M, Zou C, Cairo C, Reiz B, Whittal RM, Lebrilla CB, Wu L, Guttman A, Szigeti M, Kremkow BG, Lee KH, Sihlbom C, Adamczyk B, Jin C, Karlsson NG, Örnros J, Larson G, Nilsson J, Meyer B, Wiegandt A, Komatsu E, Perreault H, Bodnar ED, Said N, Francois YN, Leize-Wagner E, Maier S, Zeck A, Heck AJR, Yang Y, Haselberg R, Yu YQ, Alley W, Leone JW, Yuan H, Stein SE. NIST Interlaboratory Study on Glycosylation Analysis of Monoclonal Antibodies: Comparison of Results from Diverse Analytical Methods. Mol Cell Proteomics. 2020 Jan; 19(1):11-30. PMID: 33451547
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Chang D, Hackett WE, Zhong L, Wan XF, Zaia J. Measuring Site-specific Glycosylation Similarity between Influenza a Virus Variants with Statistical Certainty. Mol Cell Proteomics. 2020 09; 19(9):1533-1545. PMID: 32601173; PMCID: PMC8143645; DOI: 10.1074/mcp.RA120.002031;
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Yang JE, Rossignol ED, Chang D, Zaia J, Forrester I, Raja K, Winbigler H, Nicastro D, Jackson WT, Bullitt E. Complexity and ultrastructure of infectious extracellular vesicles from cells infected by non-enveloped virus. Sci Rep. 2020 05 14; 10(1):7939.View Related Profiles. PMID: 32409751; PMCID: PMC7224179; DOI: 10.1038/s41598-020-64531-1;
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Li L, Chang D, Han L, Zhang X, Zaia J, Wan XF. Multi-task learning sparse group lasso: a method for quantifying antigenicity of influenza A(H1N1) virus using mutations and variations in glycosylation of Hemagglutinin. BMC Bioinformatics. 2020 May 11; 21(1):182. PMID: 32393178; PMCID: PMC7216668; DOI: 10.1186/s12859-020-3527-5;
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Muraoka S, DeLeo AM, Sethi MK, Yukawa-Takamatsu K, Yang Z, Ko J, Hogan JD, Ruan Z, You Y, Wang Y, Medalla M, Ikezu S, Chen M, Xia W, Gorantla S, Gendelman HE, Issadore D, Zaia J, Ikezu T. Proteomic and biological profiling of extracellular vesicles from Alzheimer's disease human brain tissues. Alzheimers Dement. 2020 06; 16(6):896-907.View Related Profiles. PMID: 32301581; PMCID: PMC7293582; DOI: 10.1002/alz.12089;
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Klein JA, Zaia J. A Perspective on the Confident Comparison of Glycoprotein Site-Specific Glycosylation in Sample Cohorts. Biochemistry. 2020 09 01; 59(34):3089-3097. PMID: 31833756; PMCID: PMC7326640; DOI: 10.1021/acs.biochem.9b00730;
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De Leoz MLA, Duewer DL, Fung A, Liu L, Yau HK, Potter O, Staples GO, Furuki K, Frenkel R, Hu Y, Sosic Z, Zhang P, Altmann F, Gru Nwald-Grube C, Shao C, Zaia J, Evers W, Pengelley S, Suckau D, Wiechmann A, Resemann A, Jabs W, Beck A, Froehlich JW, Huang C, Li Y, Liu Y, Sun S, Wang Y, Seo Y, An HJ, Reichardt NC, Ruiz JE, Archer-Hartmann S, Azadi P, Bell L, Lakos Z, An Y, Cipollo JF, Pucic-Bakovic M, Štambuk J, Lauc G, Li X, Wang PG, Bock A, Hennig R, Rapp E, Creskey M, Cyr TD, Nakano M, Sugiyama T, Leung PA, Link-Lenczowski P, Jaworek J, Yang S, Zhang H, Kelly T, Klapoetke S, Cao R, Kim JY, Lee HK, Lee JY, Yoo JS, Kim SR, Suh SK, de Haan N, Falck D, Lageveen-Kammeijer GSM, Wuhrer M, Emery RJ, Kozak RP, Liew LP, Royle L, Urbanowicz PA, Packer NH, Song X, Everest-Dass A, Lattová E, Cajic S, Alagesan K, Kolarich D, Kasali T, Lindo V, Chen Y, Goswami K, Gau B, Amunugama R, Jones R, Stroop CJM, Kato K, Yagi H, Kondo S, Yuen CT, Harazono A, Shi X, Magnelli PE, Kasper BT, Mahal L, Harvey DJ, O'Flaherty R, Rudd PM, Saldova R, Hecht ES, Muddiman DC, Kang J, Bhoskar P, Menard D, Saati A, Merle C, Mast S, Tep S, Truong J, Nishikaze T, Sekiya S, Shafer A, Funaoka S, Toyoda M, de Vreugd P, Caron C, Pradhan P, Tan NC, Mechref Y, Patil S, Rohrer JS, Chakrabarti R, Dadke D, Lahori M, Zou C, Cairo C, Reiz B, Whittal RM, Lebrilla CB, Wu L, Guttman A, Szigeti M, Kremkow BG, Lee KH, Sihlbom C, Adamczyk B, Jin C, Karlsson NG, Örnros J, Larson G, Nilsson J, Meyer B, Wiegandt A, Komatsu E, Perreault H, Bodnar ED, Said N, Francois YN, Leize-Wagner E, Maier S, Zeck A, Heck AJR, Yang Y, Haselberg R, Yu YQ, Alley W, Leone JW, Yuan H, Stein SE. NIST Interlaboratory Study on Glycosylation Analysis of Monoclonal Antibodies: Comparison of Results from Diverse Analytical Methods. Mol Cell Proteomics. 2020 01; 19(1):11-30.View Related Profiles. PMID: 31591262; PMCID: PMC6944243; DOI: 10.1074/mcp.RA119.001677;
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Jacobsen Á, Shi X, Shao C, Eysturskard J, Mikalsen SO, Zaia J. Characterization of Glycosaminoglycans in Gaping and Intact Connective Tissues of Farmed Atlantic Salmon (Salmo salar) Fillets by Mass Spectrometry. ACS Omega. 2019 Sep 24; 4(13):15337-15347.View Related Profiles. PMID: 31572832; PMCID: PMC6761683; DOI: 10.1021/acsomega.9b01136;
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Wei J, Wu J, Tang Y, Ridgeway ME, Park MA, Costello CE, Zaia J, Lin C. Characterization and Quantification of Highly Sulfated Glycosaminoglycan Isomers by Gated-Trapped Ion Mobility Spectrometry Negative Electron Transfer Dissociation MS/MS. Anal Chem. 2019 02 19; 91(4):2994-3001.View Related Profiles. PMID: 30649866; PMCID: PMC6441329; DOI: 10.1021/acs.analchem.8b05283;
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Raghunathan R, Polinski NK, Klein JA, Hogan JD, Shao C, Khatri K, Leon D, McComb ME, Manfredsson FP, Sortwell CE, Zaia J. Glycomic and Proteomic Changes in Aging Brain Nigrostriatal Pathway. Mol Cell Proteomics. 2018 09; 17(9):1778-1787.View Related Profiles. PMID: 29915149; PMCID: PMC6126385; DOI: 10.1074/mcp.RA118.000680;
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Zaia J, Bierbaum VM. Focus on Mass Spectrometry in Glycobiology and Related Fields, Honoring Catherine E. Costello, Recipient of the 2017 ASMS Award for a Distinguished Contribution in Mass Spectrometry. J Am Soc Mass Spectrom. 2018 06; 29(6):1061-1064. PMID: 29855889
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Klein JA, Meng L, Zaia J. Deep Sequencing of Complex Proteoglycans: A Novel Strategy for High Coverage and Site-specific Identification of Glycosaminoglycan-linked Peptides. Mol Cell Proteomics. 2018 08; 17(8):1578-1590. PMID: 29773674; PMCID: PMC6072546; DOI: 10.1074/mcp.RA118.000766;
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van Eijk M, Rynkiewicz MJ, Khatri K, Leymarie N, Zaia J, White MR, Hartshorn KL, Cafarella TR, van Die I, Hessing M, Seaton BA, Haagsman HP. Lectin-mediated binding and sialoglycans of porcine surfactant protein D synergistically neutralize influenza A virus. J Biol Chem. 2018 07 06; 293(27):10646-10662.View Related Profiles. PMID: 29769321; PMCID: PMC6036198; DOI: 10.1074/jbc.RA117.001430;
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Khatri K, Pu Y, Klein JA, Wei J, Costello CE, Lin C, Zaia J. Comparison of Collisional and Electron-Based Dissociation Modes for Middle-Down Analysis of Multiply Glycosylated Peptides. J Am Soc Mass Spectrom. 2018 06; 29(6):1075-1085.View Related Profiles. PMID: 29663256; PMCID: PMC6004259; DOI: 10.1007/s13361-018-1909-y;
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Hogan JD, Klein JA, Wu J, Chopra P, Boons GJ, Carvalho L, Lin C, Zaia J. Software for Peak Finding and Elemental Composition Assignment for Glycosaminoglycan Tandem Mass Spectra. Mol Cell Proteomics. 2018 07; 17(7):1448-1456. PMID: 29615495; PMCID: PMC6030731; DOI: 10.1074/mcp.RA118.000590;
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Wu J, Wei J, Hogan JD, Chopra P, Joshi A, Lu W, Klein J, Boons GJ, Lin C, Zaia J. Negative Electron Transfer Dissociation Sequencing of 3-O-Sulfation-Containing Heparan Sulfate Oligosaccharides. J Am Soc Mass Spectrom. 2018 06; 29(6):1262-1272. PMID: 29564812; PMCID: PMC6004244; DOI: 10.1007/s13361-018-1907-0;
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Wu ZL, Person AD, Anderson M, Burroughs B, Tatge T, Khatri K, Zou Y, Wang L, Geders T, Zaia J, Sackstein R. Imaging specific cellular glycan structures using glycosyltransferases via click chemistry. Glycobiology. 2018 02 01; 28(2):69-79.View Related Profiles. PMID: 29186441; PMCID: PMC5993098; DOI: 10.1093/glycob/cwx095;
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Wu ZL, Huang X, Ethen CM, Tatge T, Pasek M, Zaia J. Non-reducing end labeling of heparan sulfate via click chemistry and a high throughput ELISA assay for heparanase. Glycobiology. 2017 Jun 01; 27(6):518-524. PMID: 28025251; PMCID: PMC5421504; DOI: 10.1093/glycob/cww130;
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Wu ZL, Huang X, Ethen CM, Tatge T, Pasek M, Zaia J. Non-reducing end labeling of heparan sulfate via click chemistry and a high throughput ELISA assay for heparanase. Glycobiology. 2017 Feb 06; 1-7. PMID: 28173134; DOI: 10.1093/glycob/cww130;
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Liu Y, McBride R, Stoll M, Palma AS, Silva L, Agravat S, Aoki-Kinoshita KF, Campbell MP, Costello CE, Dell A, Haslam SM, Karlsson NG, Khoo KH, Kolarich D, Novotny MV, Packer NH, Ranzinger R, Rapp E, Rudd PM, Struwe WB, Tiemeyer M, Wells L, York WS, Zaia J, Kettner C, Paulson JC, Feizi T, Smith DF. The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting glycan microarray-based data. Glycobiology. 2017 04; 27(4):280-284.View Related Profiles. PMID: 27993942; PMCID: PMC5444268; DOI: 10.1093/glycob/cww118;
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Zaia J, Khatri K, Klein J, Shao C, Sheng Y, Viner R. Complete Molecular Weight Profiling of Low-Molecular Weight Heparins Using Size Exclusion Chromatography-Ion Suppressor-High-Resolution Mass Spectrometry. Anal Chem. 2016 11 01; 88(21):10654-10660.View Related Profiles. PMID: 27709905; PMCID: PMC5111364; DOI: 10.1021/acs.analchem.6b03081;
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Dierker T, Shao C, Haitina T, Zaia J, Hinas A, Kjellén L. Nematodes join the family of chondroitin sulfate-synthesizing organisms: Identification of an active chondroitin sulfotransferase in Caenorhabditis elegans. Sci Rep. 2016 10 05; 6:34662.View Related Profiles. PMID: 27703236; PMCID: PMC5050403; DOI: 10.1038/srep34662;
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Struwe WB, Agravat S, Aoki-Kinoshita KF, Campbell MP, Costello CE, Dell A, Ten Feizi, Haslam SM, Karlsson NG, Khoo KH, Kolarich D, Liu Y, McBride R, Novotny MV, Packer NH, Paulson JC, Rapp E, Ranzinger R, Rudd PM, Smith DF, Tiemeyer M, Wells L, York WS, Zaia J, Kettner C. The minimum information required for a glycomics experiment (MIRAGE) project: sample preparation guidelines for reliable reporting of glycomics datasets. Glycobiology. 2016 Sep; 26(9):907-910.View Related Profiles. PMID: 27654115; PMCID: PMC5045532; DOI: 10.1093/glycob/cww082;
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Khatri K, Klein JA, White MR, Grant OC, Leymarie N, Woods RJ, Hartshorn KL, Zaia J. Integrated Omics and Computational Glycobiology Reveal Structural Basis for Influenza A Virus Glycan Microheterogeneity and Host Interactions. Mol Cell Proteomics. 2016 Jun; 15(6):1895-912.View Related Profiles. PMID: 26984886; PMCID: PMC5083086; DOI: 10.1074/mcp.M116.058016;
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Hu H, Mao Y, Huang Y, Lin C, Zaia J. Bioinformatics of glycosaminoglycans. Perspectives in Science. 2016; 11(C). View Publication
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Tykesson E, Mao Y, Maccarana M, Pu Y, Gao J, Lin C, Zaia J, Westergren-Thorsson G, Ellervik U, Malmström L, Malmström A. Deciphering the Mode of Action of the Processive Polysaccharide Modifying Enzyme Dermatan Sulfate Epimerase 1 by Hydrogen-Deuterium Exchange Mass Spectrometry. Chem Sci. 2016 Feb 01; 7(2):1447-1456.View Related Profiles. PMID: 26900446; PMCID: PMC4755500; DOI: 10.1039/c5sc03798k;
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Aoki-Kinoshita K, Agravat S, Aoki NP, Arpinar S, Cummings RD, Fujita A, Fujita N, Hart GM, Haslam SM, Kawasaki T, Matsubara M, Moreman KW, Okuda S, Pierce M, Ranzinger R, Shikanai T, Shinmachi D, Solovieva E, Suzuki Y, Tsuchiya S, Yamada I, York WS, Zaia J, Narimatsu H. GlyTouCan 1.0--The international glycan structure repository. Nucleic Acids Res. 2016 Jan 4; 44(D1):D1237-42. PMID: 26476458; PMCID: PMC4702779; DOI: 10.1093/nar/gkv1041;
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Salanti A, Clausen TM, Agerbæk MØ, Al Nakouzi N, Dahlbäck M, Oo HZ, Lee S, Gustavsson T, Rich JR, Hedberg BJ, Mao Y, Barington L, Pereira MA, LoBello J, Endo M, Fazli L, Soden J, Wang CK, Sander AF, Dagil R, Thrane S, Holst PJ, Meng L, Favero F, Weiss GJ, Nielsen MA, Freeth J, Nielsen TO, Zaia J, Tran NL, Trent J, Babcook JS, Theander TG, Sorensen PH, Daugaard M. Targeting Human Cancer by a Glycosaminoglycan Binding Malaria Protein. Cancer Cell. 2015 Oct 12; 28(4):500-14.View Related Profiles. PMID: 26461094; PMCID: PMC4790448; DOI: 10.1016/j.ccell.2015.09.003;
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Aoki NP, Aoki-Kinoshita KF, Agravat S, Zaia J et. al. Annual Meeting of the Society-for-Glycobiology on Glycobiology. The Official Release of the International Glycan Structure Repository. Glycobiology. 2015.
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Zaia J, Klein J, Khatri K, Yip S. GlyrReSoft: A tool for assigning sites specific glycoprotein glycosylation from integrated omics data using rigorous statistics. Annual Meeting of the Society-for-Glycobiology on Glycobiology. 2015.
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Shao C, Klein J, Turiak L, Phillips J, Zaia J. Annual Meeting of the Society-for-Glycobiology on Glycobiology. Dysregulation of proteoglycan expression in astrocytoma: assessment using an integrated omics approach. Glycobiology. 2015.
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Khatri K, Klein J, White MR, Grant OC, Leymarie N, Woods RJ, Hartshorn KL, Zaia J. Annual Meeting of the Society-for-Glycobiology on Glycobiology. Understanding glycan mediated interactions of the Influenza A virus with host immune system using integrated omics and computational glycobiology. Glycobiology. 2015; 25.
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Reine TM, Kolseth IB, Meen AJ, Lindahl JP, Jenssen TG, Reinholt FP, Zaia J, Shao C, Hartmann A, Kolset SO. Effects of restoring normoglycemia in type 1 diabetes on inflammatory profile and renal extracellular matrix structure after simultaneous pancreas and kidney transplantation. Diabetes Res Clin Pract. 2015 Jan; 107(1):46-53.View Related Profiles. PMID: 25467621; PMCID: PMC4324617; DOI: 10.1016/j.diabres.2014.10.006;
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Mao Y, Huang Y, Buczek-Thomas JA, Ethen CM, Nugent MA, Wu ZL, Zaia J. A liquid chromatography-mass spectrometry-based approach to characterize the substrate specificity of mammalian heparanase. J Biol Chem. 2014 Dec 5; 289(49):34141-51.View Related Profiles. PMID: 25336655; PMCID: PMC4256347; DOI: 10.1074/jbc.M114.589630;
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Turiák L, Shao C, Meng L, Khatri K, Leymarie N, Wang Q, Pantazopoulos H, Leon DR, Zaia J. Workflow for combined proteomics and glycomics profiling from histological tissues. Anal Chem. 2014 Oct 7; 86(19):9670-8.View Related Profiles. PMID: 25203838; PMCID: PMC4427244; DOI: 10.1021/ac5022216;
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Khatri K, Staples GO, Leymarie N, Leon DR, Turiák L, Huang Y, Yip S, Hu H, Heckendorf CF, Zaia J. Confident assignment of site-specific glycosylation in complex glycoproteins in a single step. J Proteome Res. 2014 Oct 3; 13(10):4347-55.View Related Profiles. PMID: 25153361; PMCID: PMC4184449; DOI: 10.1021/pr500506z;
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Hu H, Huang Y, Mao Y, Yu X, Xu Y, Liu J, Zong C, Boons GJ, Lin C, Xia Y, Zaia J. A computational framework for heparan sulfate sequencing using high-resolution tandem mass spectra. Mol Cell Proteomics. 2014 Sep; 13(9):2490-502.View Related Profiles. PMID: 24925905; PMCID: PMC4159664; DOI: 10.1074/mcp.M114.039560;
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York WS, Agravat S, Aoki-Kinoshita KF, McBride R, Campbell MP, Costello CE, Dell A, Feizi T, Haslam SM, Karlsson N, Khoo KH, Kolarich D, Liu Y, Novotny M, Packer NH, Paulson JC, Rapp E, Ranzinger R, Rudd PM, Smith DF, Struwe WB, Tiemeyer M, Wells L, Zaia J, Kettner C. MIRAGE: the minimum information required for a glycomics experiment. Glycobiology. 2014 May; 24(5):402-6.View Related Profiles. PMID: 24653214; PMCID: PMC3976285; DOI: 10.1093/glycob/cwu018;
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Aoki-Kinoshita KF, Agravat S, Aoki NP, Zaia J et. al. Joint Meeting of the Society-for-Glycobiology (SFG). Development of an International Glycan Structure Repository. Glycobiology. 2014; 24.
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Hu H, Dittwald P, Zaia J, Valkenborg D. Comment on "Computation of isotopic peak center-mass distribution by fourier transform". Anal Chem. 2013 Dec 17; 85(24):12189-92. PMID: 24187947; PMCID: PMC4119064; DOI: 10.1021/ac402731h;
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Mathias DK, Pastrana-Mena R, Ranucci E, Tao D, Ferruti P, Ortega C, Staples GO, Zaia J, Takashima E, Tsuboi T, Borg NA, Verotta L, Dinglasan RR. A small molecule glycosaminoglycan mimetic blocks Plasmodium invasion of the mosquito midgut. PLoS Pathog. 2013; 9(11):e1003757. PMID: 24278017; PMCID: PMC3836724; DOI: 10.1371/journal.ppat.1003757;
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Ramachandra R, Namburi RB, Ortega-Martinez O, Shi X, Zaia J, Dupont ST, Thorndyke MC, Lindahl U, Spillmann D. Brittlestars contain highly sulfated chondroitin sulfates/dermatan sulfates that promote fibroblast growth factor 2-induced cell signaling. Glycobiology. 2014 Feb; 24(2):195-207. PMID: 24253764; PMCID: PMC3907082; DOI: 10.1093/glycob/cwt100;
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Lu Z, Rynkiewicz MJ, Yang CY, Madico G, Perkins HM, Wang Q, Costello CE, Zaia J, Seaton BA, Sharon J. The binding sites of monoclonal antibodies to the non-reducing end of Francisella tularensis O-antigen accommodate mainly the terminal saccharide. Immunology. 2013 Nov; 140(3):374-89.View Related Profiles. PMID: 23844703; PMCID: PMC3800442; DOI: 10.1111/imm.12150;
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Leymarie N, Griffin PJ, Jonscher K, Kolarich D, Orlando R, McComb M, Zaia J, Aguilan J, Alley WR, Altmann F, Ball LE, Basumallick L, Bazemore-Walker CR, Behnken H, Blank MA, Brown KJ, Bunz SC, Cairo CW, Cipollo JF, Daneshfar R, Desaire H, Drake RR, Go EP, Goldman R, Gruber C, Halim A, Hathout Y, Hensbergen PJ, Horn DM, Hurum D, Jabs W, Larson G, Ly M, Mann BF, Marx K, Mechref Y, Meyer B, Möginger U, Neusüß C, Nilsson J, Novotny MV, Nyalwidhe JO, Packer NH, Pompach P, Reiz B, Resemann A, Rohrer JS, Ruthenbeck A, Sanda M, Schulz JM, Schweiger-Hufnagel U, Sihlbom C, Song E, Staples GO, Suckau D, Tang H, Thaysen-Andersen M, Viner RI, An Y, Valmu L, Wada Y, Watson M, Windwarder M, Whittal R, Wuhrer M, Zhu Y, Zou C. Interlaboratory study on differential analysis of protein glycosylation by mass spectrometry: the ABRF glycoprotein research multi-institutional study 2012. Mol Cell Proteomics. 2013 Oct; 12(10):2935-51.View Related Profiles. PMID: 23764502; PMCID: PMC3790302; DOI: 10.1074/mcp.M113.030643;
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Kolarich D, Rapp E, Struwe WB, Haslam SM, Zaia J, McBride R, Agravat S, Campbell MP, Kato M, Ranzinger R, Kettner C, York WS. The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting mass-spectrometry-based glycoanalytic data. Mol Cell Proteomics. 2013 Apr; 12(4):991-5. PMID: 23378518; PMCID: PMC3617344; DOI: 10.1074/mcp.O112.026492;
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Gill VL, Aich U, Rao S, Pohl C, Zaia J. Disaccharide analysis of glycosaminoglycans using hydrophilic interaction chromatography and mass spectrometry. Anal Chem. 2013 Jan 15; 85(2):1138-45. PMID: 23234263; PMCID: PMC3557806; DOI: 10.1021/ac3030448;
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Leymarie N, Griffin PJ, Xing C, Jonscher K, Kolarich D, Orlando R. Mccomb ME, Zaia J. 61st ASMS Conference on Mass Spectrometry and Allied Topics. Ability of the glycoproteomics comminuty to profile N-glycosylation of prostate specific antigen by mass spectrometry: an ABRF 2013 Interlaboratory Study. 2013.
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Thaysen-Andersen M, Suckau D, Jonscher K, Kolarich D, Orlando R, Mccomb ME, Zaia J, Neymarie N. Glycoprotein Research Group (gPRG) 2013 Interlaboratory Study: Quantitative N-glycan Profiling of Prostate Specific Antigen. Journal of biomolecular techniques: JBT. 2013; 24(Suppl):S71.
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Maxwell E, Tan Y, Tan Y, Hu H, Benson G, Aizikov K, Conley S, Staples GO, Slysz GW, Smith RD, Zaia J. GlycReSoft: a software package for automated recognition of glycans from LC/MS data. PLoS One. 2012; 7(9):e45474.View Related Profiles. PMID: 23049804; PMCID: PMC3458864; DOI: 10.1371/journal.pone.0045474;
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Li L, Zhang F, Zaia J, Linhardt RJ. Top-down approach for the direct characterization of low molecular weight heparins using LC-FT-MS. Anal Chem. 2012 Oct 16; 84(20):8822-9. PMID: 22985071; PMCID: PMC3479637; DOI: 10.1021/ac302232c;
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Gill VL, Wang Q, Shi X, Zaia J. Mass spectrometric method for determining the uronic acid epimerization in heparan sulfate disaccharides generated using nitrous acid. Anal Chem. 2012 Sep 4; 84(17):7539-46.View Related Profiles. PMID: 22873817; PMCID: PMC3437266; DOI: 10.1021/ac3016054;
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Shi X, Huang Y, Mao Y, Naimy H, Zaia J. Tandem mass spectrometry of heparan sulfate negative ions: sulfate loss patterns and chemical modification methods for improvement of product ion profiles. J Am Soc Mass Spectrom. 2012 Sep; 23(9):1498-511.View Related Profiles. PMID: 22825743; PMCID: PMC4146577; DOI: 10.1007/s13361-012-0429-4;
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Thelin MA, Svensson KJ, Shi X, Bagher M, Axelsson J, Isinger-Ekstrand A, van Kuppevelt TH, Johansson J, Nilbert M, Zaia J, Belting M, Maccarana M, Malmström A. Dermatan sulfate is involved in the tumorigenic properties of esophagus squamous cell carcinoma. Cancer Res. 2012 Apr 15; 72(8):1943-52. PMID: 22350411; PMCID: PMC3328612; DOI: 10.1158/0008-5472.CAN-11-1351;
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Rosas-Alquicira G, Acosta-Blano I, Ortega-Francisco S, Fuentes-Romero LL, Newburg DS, Ruiz-Palacios G, Mao Y, Zaia J, Viveros-Rogel M. Joint Meeting of the Society for Glycobiology and American Society for Matrix Biology. Human milk Glycosaminoglycans inhibit HIV-1 primary isolate in vitro infection. Glycobiology Journal. San Diego. 2012; 22(11):1632.
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Mao Y, Huang Y, Wu L, Zaia J. Joint Meeting of the Society-for-Glycobiology. Characterization of the substratum specificity of mammalian heparanase using the aglycomic approach. Glycobiology. 2012; 22.
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Jonscher K, Kolarich D, Zaia J, Leymarie N. (gPRG) 2012 Quantitative Glycoprotein Study. Journal of biomolecular techniques: JBT. 2012; 23(Suppl):S16-S17.
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Staples GO, Zaia J. Analysis of Glycosaminoglycans Using Mass Spectrometry. Curr Proteomics. 2011; 8:325-336. View Publication
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Wang Q, Shi X, Leymarie N, Madico G, Sharon J, Costello CE, Zaia J. A typical preparation of Francisella tularensis O-antigen yields a mixture of three types of saccharides. Biochemistry. 2011 Dec 20; 50(50):10941-50.View Related Profiles. PMID: 22091710; PMCID: PMC3238095; DOI: 10.1021/bi201450v;
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Huang Y, Shi X, Yu X, Leymarie N, Staples GO, Yin H, Killeen K, Zaia J. Improved liquid chromatography-MS/MS of heparan sulfate oligosaccharides via chip-based pulsed makeup flow. Anal Chem. 2011 Nov 1; 83(21):8222-9.View Related Profiles. PMID: 21923145; PMCID: PMC3205275; DOI: 10.1021/ac201964n;
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Crouch E, Nikolaidis N, McCormack FX, McDonald B, Allen K, Rynkiewicz MJ, Cafarella TM, White M, Lewnard K, Leymarie N, Zaia J, Seaton BA, Hartshorn KL. Mutagenesis of surfactant protein D informed by evolution and x-ray crystallography enhances defenses against influenza A virus in vivo. J Biol Chem. 2011 Nov 25; 286(47):40681-92.View Related Profiles. PMID: 21965658; PMCID: PMC3220461; DOI: 10.1074/jbc.M111.300673;
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Leymarie N, McComb ME, Naimy H, Staples GO, Zaia J. Differential Characterization and Classification of Tissue Specific Glycosaminoglycans by Tandem Mass Spectrometry and Statistical Methods. Int J Mass Spectrom. 2012 Feb 15; 312:144-154.View Related Profiles. PMID: 22523474; PMCID: PMC3329220; DOI: 10.1016/j.ijms.2011.07.019;
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Schumacher VA, Schlötzer-Schrehardt U, Karumanchi SA, Shi X, Zaia J, Jeruschke S, Zhang D, Pavenstädt H, Pavenstaedt H, Drenckhan A, Amann K, Ng C, Hartwig S, Ng KH, Ho J, Kreidberg JA, Taglienti M, Royer-Pokora B, Ai X. WT1-dependent sulfatase expression maintains the normal glomerular filtration barrier. J Am Soc Nephrol. 2011 Jul; 22(7):1286-96.View Related Profiles. PMID: 21719793; PMCID: PMC3137576; DOI: 10.1681/ASN.2010080860;
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Naimy H, Buczek-Thomas JA, Nugent MA, Leymarie N, Zaia J. Highly sulfated nonreducing end-derived heparan sulfate domains bind fibroblast growth factor-2 with high affinity and are enriched in biologically active fractions. J Biol Chem. 2011 Jun 3; 286(22):19311-9.View Related Profiles. PMID: 21471211; PMCID: PMC3103309; DOI: 10.1074/jbc.M110.204693;
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Naimy H, Leymarie N, Buczek-Thomas JA, Nugent MA, Zaia J. Annual Conference of the Society-for-Glycobiology. Characterization of Heparan Sulfate N-Sulfated Domains Binding Fibroblast Growth Factor-2. Glycobiology. 2011; 20.
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Hollingsworth MT, Hart GW, Paulson JC, Lebrilla C, Zaia J et al. Glycobiology. Program and abstracts for the 2011 Meeting of the Society for Glycobiology. 2011; 21(11):1454-1531. View Publication
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Hollingsworth MT, Hart GW, Paulson JC, Lebrilla C, Zaia J et al. Glycobiology. Program and abstracts for the 2011 Meeting of the Society for Glycobiology. 2011; 21(11):1454-1531. View Publication
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Rynkiewicz MJ, Luo D, Leymarie N, Crouch EC, Hartshorn KL, Head JF, Mccormack FX, van Eijk M, Zaia J, Seaton BA. Mechanisms of Interaction Between Lung Collectins and Influenza a Virus Hemagglutinin. Biophysical Journal. 2011; 100(3). View Publication
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Staples G, Zaia J. Carbohydrate Recognition: Biological Problems, Methods, and Applications. Mass Spectrometry in Carbohydrate Sequencing and Binding Analysis. 2011; 257-300. View Publication
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Kolarich D, Orlando R, Zaia J. gPRG: Toward Consensus on Glycan Analysis: Reliable Methods and Reproducibility. Journal of biomolecular techniques: JBT. 2011; 22(Suppl):S22.
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Mao Y, Newburg DS, Costello CE, Zaia J. Annual Conference of the Society-for-Glycobiology. Comparative Glycomics of Human and Bovine Milk Glycosaminoglycans. Gylcobiology. 2011; 21.
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Huang Yu Shi X, Zaia J. Annual Conference of the Society-for-Glycobiology. LC-MS and LC-MS/MS Study of Heparan Sulfate Oligosaccharides Processed by Human Sulf-2. Glycobiology. 2011; 21.
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Bielik A, Mcleod E, Landry D, Mendoza V, Zaia J, Guthrie EP. Annual Conference of the Society-for-Glycobiology. Characterization of Three Novel Heparinases Cloned from Bacteroides eggerthii. Glycobiology. 2011; 21.
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Leymarie N, Hartshorn K, White MR, Cafarella T, Seaton B, Rynkiewicz MJ, Zaia J. Annual Conference of the Society-for-Glycobiology. Studies on Site-Specific N-Glycosylation of Hemagglutinin from Influenza AViruse Phil82 and Surfactant Protein D. Glycobiology. 2011.
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Staples GO, Zaia J. In Carbohydrate Recognition; Wang B, Boons GJ, Eds. John Wiley & Sons, Inc. Hoboken. 2011; 257-300.
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Dreyfuss JM, Jacobs C, Gindin Y, Benson G, Staples GO, Zaia J. Targeted analysis of glycomics liquid chromatography/mass spectrometry data. Anal Bioanal Chem. 2011 Jan; 399(2):727-35. PMID: 20953780; PMCID: PMC3254673; DOI: 10.1007/s00216-010-4235-1;
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Langsdorf A, Schumacher V, Shi X, Tran T, Zaia J, Jain S, Taglienti M, Kreidberg JA, Fine A, Ai X. Expression regulation and function of heparan sulfate 6-O-endosulfatases in the spermatogonial stem cell niche. Glycobiology. 2011 Feb; 21(2):152-61.View Related Profiles. PMID: 20855470; PMCID: PMC3031337; DOI: 10.1093/glycob/cwq133;
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Bowman MJ, Zaia J. Comparative glycomics using a tetraplex stable-isotope coded tag. Anal Chem. 2010 Apr 1; 82(7):3023-31. PMID: 20230064; PMCID: PMC2854645; DOI: 10.1021/ac100108w;
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Staples GO, Naimy H, Yin H, Kileen K, Kraiczek K, Costello CE, Zaia J. Improved hydrophilic interaction chromatography LC/MS of heparinoids using a chip with postcolumn makeup flow. Anal Chem. 2010 Jan 15; 82(2):516-22.View Related Profiles. PMID: 20000724; PMCID: PMC3247906; DOI: 10.1021/ac901706f;
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Huang Y, Shi X, Yin H, Staples G, Killeen K, Zaia J. Annual Conference of the Society-for-Glycobiology. Improved Heparan Sulfate Oligosaccharide Structural Analysis using LC-Tandem Mass Spectrometry with Post-Column Charge State Manipulation. Glycobiology. 2010; 20.
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Naimy H, Staples G, Mccomb ME, Costello CE, Zaia J, Leymarie N. Patterns of Tissue-Specific Glycosaminoglycan Expression Revealed by Tandem Mass Spectrometry and Statistical Methods. Journal of biomolecular techniques: JBT. 2010; 21(3 Suppl).
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Bielik AM, Zaia J. Extraction of chondroitin/dermatan sulfate glycosaminoglycans from connective tissue for mass spectrometric analysis. Methods Mol Biol. 2010; 600:215-25. PMID: 19882131; DOI: 10.1007/978-1-60761-454-8_15;
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Zaia J. On-line separations combined with MS for analysis of glycosaminoglycans. Mass Spectrom Rev. 2009 Mar-Apr; 28(2):254-72. PMID: 18956477; PMCID: PMC4119066; DOI: 10.1002/mas.20200;
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Staples GO, Bowman MJ, Costello CE, Hitchcock AM, Lau JM, Leymarie N, Miller C, Naimy H, Shi X, Zaia J. A chip-based amide-HILIC LC/MS platform for glycosaminoglycan glycomics profiling. Proteomics. 2009 Feb; 9(3):686-95.View Related Profiles. PMID: 19137549; PMCID: PMC2771417; DOI: 10.1002/pmic.200701008;
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Leymarie N, Staples G, Naimy H, Mccomb ME, Zaia J. Annual Meeting of the Society-for-Glycobiology. Tandem Mass Spectrometry and Statistical Methods: Tools Used to Differentiate, Characterize and Classify Tissues Specific Glycosaminoglycans. Glycobiology. 2009; 19.
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Staples G, Zaia J. Annual Meeting of the Society-for-Glycobiology. Domain Structure Analysis of Heparan Sulfates by Mass Spectrometry. Glycobiology. 2009; 19.
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Naimy H, Leymarie N, Zaia J. Annual Meeting of the Society-for-Glycobiology. Diagnostic Ions for Anticoagulant Heparan Sulfate Octasaccharides by Low Energy CID Tandem Mass Spectrometry. Glycobiology. 2009; 19.
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Shi S, Staples G, Leymarie N, Naimy H, Zaia J. 36th American Chemical Society Northeast Regional Meeting. Glycomics of Heparan Sulfate. 2009.
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Zaia J, Shi X. Reply to Savolainen: Organ- and Cell-specific GAG Chains. Journal of Biological Chemistry. 2009; 284(18):le2. View Publication
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Hitchcock AM, Bowman MJ, Staples GO, Zaia J. Improved workup for glycosaminoglycan disaccharide analysis using CE with LIF detection. Electrophoresis. 2008 Nov; 29(22):4538-48. PMID: 19035406; PMCID: PMC2810710; DOI: 10.1002/elps.200800335;
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Staples G, Costello CE, Zaia J. Annual Meeting of the Society-for-Glycobiology. Structural Analysis of Sulf2 Activity on Heparan Sulfate Domains. Glycobiology. 2008; 18.
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Naimy H, Leymarie N, Zaia J. Annual Meeting of the Society-for-Glycobiology. Functional Characterization of Heparinoid Octasaccharide Libraries Using LC/MS. Glycobiology. 2008; 18.
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Staples G, Leymarie N, Naimy H, Zaia J. Annual Meeting of the Society-for-Glycobiology. Informatics for Complex Glycan Mass Spectral Datasets. Glycobiology. 2008; 18.
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Bowman MJ, Zaia J. Tags for the stable isotopic labeling of carbohydrates and quantitative analysis by mass spectrometry. Anal Chem. 2007 Aug 1; 79(15):5777-84. PMID: 17605469; PMCID: PMC2532755; DOI: 10.1021/ac070581b;
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Ziegler A, Zaia J. Size-exclusion chromatography of heparin oligosaccharides at high and low pressure. J Chromatogr B Analyt Technol Biomed Life Sci. 2006 Jun 6; 837(1-2):76-86. PMID: 16704936
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Zaia J. In Ionization Methods; Gross ML, Caprioli RM, Eds. Elsevier. Amsterdam. 2006; 6:889-903.
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Hitchcock AM, Costello CE, Zaia J. Meeting of the Society-for-Gylcobiology. Comparative glycomics of connective tissue glycosaminoglycans using mass spectrometry. Glycobiology. 2006; 16.
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Zaia J, Campuzano I, Giles K, Bateman R, Keith C, Costello CE. Meeting of the Society-for-Gylcobiology. Electrospray ion mobility spectrometry of isomeric carbohydrates. Glycobiology. 2006; 16.
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Zaia J. Principles of Mass Spectrometry of Glycosaminoglycans. Journal of Biomacromolecular Mass Spectrometry. 2005; 1:3-36.
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Hitchcock AM, Costello CE, Zaia J. Meeting of the Society-for-Glycobiology. An LC/MS/MS platform for glycoform quantification of chondroitin sulfate. Glycobiology. 2005; 15.
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Zaia J, Seymour JL, Costello CE. Meeting of the Society-for-Glycobiology. Glycomics using negative ion tandem mass spectrometry of native glycans. Glycobiology. 2005; 15.
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Naggar EF, Costello CE, Zaia J. Competing fragmentation processes in tandem mass spectra of heparin-like glycosaminoglycans. J Am Soc Mass Spectrom. 2004 Nov; 15(11):1534-44.View Related Profiles. PMID: 15519220
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Zaia J. Mass spectrometry of oligosaccharides. Mass Spectrom Rev. 2004 May-Jun; 23(3):161-227. PMID: 14966796
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Costello CE, Blackmun-Ross KE, Budnik BA, Elkin Y, Ivleva VB, Steen JA, Pittman JL, Xie B, Mccomb ME, O'Connor PB, Zaia J. Glycobiology. Sample preparation and mass spectral fragmentation methods for use in glycobiology. 2004.
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Zaia J, Li XQ, Chan SY, Costello CE. Tandem mass spectrometric strategies for determination of sulfation positions and uronic acid epimerization in chondroitin sulfate oligosaccharides. J Am Soc Mass Spectrom. 2003 Nov; 14(11):1270-81.View Related Profiles. PMID: 14597117
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Zaia J, Costello CE. Tandem mass spectrometry of sulfated heparin-like glycosaminoglycan oligosaccharides. Anal Chem. 2003 May 15; 75(10):2445-55.View Related Profiles. PMID: 12918989
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Costello CE, Mccomb ME, O'Connor PB, Zaia J. 8th Annual Conference of the Society-for-Glycobiology. Mass spectrometry-based methods for revealing the Glyeans' family secrets. Gylcobiology. 2003; 13.
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Naggar EF, Costello CE, Zaia J. 8th Annual Conference of the Society-for-Glycobiology. Identification and sequencing of protein binding heparin-like glycosaminoglycan oligosaccharides. Glycobiology. 2003; 13.
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McClellan JE, Costello CE, O'Connor PB, Zaia J. Influence of charge state on product ion mass spectra and the determination of 4S/6S sulfation sequence of chondroitin sulfate oligosaccharides. Anal Chem. 2002 Aug 1; 74(15):3760-71.View Related Profiles. PMID: 12175164
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Zaia J, Costello CE. 7th Annual Conference of the Society-for-Glycobiology. A new approach for sequencing heparins. Glycobiology. 2002; 12.
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Zaia J, McClellan JE, Costello CE. Tandem mass spectrometric determination of the 4S/6S sulfation sequence in chondroitin sulfate oligosaccharides. Anal Chem. 2001 Dec 15; 73(24):6030-9.View Related Profiles. PMID: 11791576
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Barry F, Boynton R, Murphy M, Haynesworth S, Zaia J. The SH-3 and SH-4 antibodies recognize distinct epitopes on CD73 from human mesenchymal stem cells. Biochem Biophys Res Commun. 2001 Nov 30; 289(2):519-24. PMID: 11716504
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Zaia J, Boynton R, Heinegård D, Barry F. Posttranslational modifications to human bone sialoprotein determined by mass spectrometry. Biochemistry. 2001 Oct 30; 40(43):12983-91. PMID: 11669636
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Zaia J, Costello CE. Compositional analysis of glycosaminoglycans by electrospray mass spectrometry. Anal Chem. 2001 Jan 15; 73(2):233-9.View Related Profiles. PMID: 11199971
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Cheng X, Cole RN, Zaia J, Hart GW. Alternative O-glycosylation/O-phosphorylation of the murine estrogen receptor beta. Biochemistry. 2000 Sep 26; 39(38):11609-20. PMID: 10995228
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Zaia J, Costello CE. Characterization of glycosaminoglycan structure using mass spectrometry. Glycobiology. 2000; 10(10):1093.
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Zaia J, Liu B, Boynton R, Barry F. Structural analysis of cartilage proteoglycans and glycoproteins using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Anal Biochem. 2000 Jan 1; 277(1):94-103. PMID: 10610693
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Barry FP, Boynton RE, Haynesworth S, Murphy JM, Zaia J. The monoclonal antibody SH-2, raised against human mesenchymal stem cells, recognizes an epitope on endoglin (CD105). Biochem Biophys Res Commun. 1999 Nov; 265(1):134-9. PMID: 10548503
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Fenselau C, Antoine MD, Fabris D, Hathout Y, He T, Zaia J. In Metallothionein IV; Klaasen C, Ed. Birkhauser. Basel. 1999; 577-580.
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Fenselau C, Antoine MD, Fabris D, Hathout Y, He T, Zaia J. Metallothionein IV. A chemical mechanism for inactivation of anticancer drugs by metallothionein. 1999; 577-580. View Publication
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Zaia J, Fabris D, Wei D, Karpel RL, Fenselau C. Monitoring metal ion flux in reactions of metallothionein and drug-modified metallothionein by electrospray mass spectrometry. Protein Sci. 1998 Nov; 7(11):2398-404. PMID: 9828006; PMCID: PMC2143854
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van den Bos C, Rammes A, Vogl T, Boynton R, Zaia J, Sorg C, Roth J. Copurification of P6, MRP8, and MRP14 from human granulocytes and separation of individual proteins. Protein Expr Purif. 1998 Aug; 13(3):313-8. PMID: 9693055
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Bruder SP, Ricalton NS, Boynton RE, Connolly TJ, Jaiswal N, Zaia J, Barry FP. Mesenchymal stem cell surface antigen SB-10 corresponds to activated leukocyte cell adhesion molecule and is involved in osteogenic differentiation. J Bone Miner Res. 1998 Apr; 13(4):655-63. PMID: 9556065
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Zaia J, Boynton RE, McIntosh A, Marshak DR, Olsson H, Heinegârd D, Barry FP. Post-translational modifications in cartilage oligomeric matrix protein. Characterization of the N-linked oligosaccharides by matrix-assisted laser desorption ionization time-of-flight mass spectrometry. J Biol Chem. 1997 May 30; 272(22):14120-6. PMID: 9162039
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Zaia J, Jiang L, Han MS, Tabb JR, Wu Z, Fabris D, Fenselau C. A binding site for chlorambucil on metallothionein. Biochemistry. 1996 Mar 5; 35(9):2830-5. PMID: 8608118
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Fabris D, Zaia J, Hathout Y, Fenselau C. Retention of thiol protons in two classes of protein zinc ion coordination centers. J Am Chem Soc. 1996; 118:12242-12243. View Publication
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Zaia J. Charged derivatives for peptide sequencing using a magnetic sector instrument. Methods Mol Biol. 1996; 61:29-41. PMID: 8930863
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Zaia J, Boynton R, Heinegard D, Barry F. Patterns of glycosylation in cartilage oligomeric matrix protein measured by monosaccharide composition analysis, MALDI/TOF and electrospray mass spectrometry. Glycobiology. 1996; 6(7):115.
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Zaia J, Biemann K. Comparison of charged derivatives for high energy collision-induced dissociation tandem mass spectrometry. J Am Soc Mass Spectrom. 1995; 6(5):428-436. View Publication
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Day BW, Skipper PL, Zaia J, Singh K, Tannenbaum SR. Enantiospecificity of covalent adduct formation by benzo[a]pyrene anti-diol epoxide with human serum albumin. Chem Res Toxicol. 1994 Nov-Dec; 7(6):829-35. PMID: 7696539
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Zaia J, Biemann K. Characteristics of high energy collision-induced dissociation tandem mass spectra of polycyclic aromatic hydrocarbon diolepoxide adducted peptides. J Am Soc Mass Spectrom. 1994; 5(7):649-654. View Publication
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Zaia J, Biemann K. Proteinase K activity inhibited near amino acids carrying large substituents: three PAH diolepoxides covalently modify His-146 human serum albumin residues. J Am Chem Soc. 1994; 116:7407-7408. View Publication
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Zaia J, Annan RS, Biemann K. The correct molecular weight of myoglobin, a common calibrant for mass spectrometry. Rapid Commun Mass Spectrom. 1992 Jan; 6(1):32-6. PMID: 1591398
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Day BW, Skipper PL, Zaia J, Tannenbaum SR. Benzo[a]pyrene anti-diol epoxide covalently modifies human serum albumin carboxylate side chains and imidazole side chains of histidine(146). J Am Chem Soc. 1991; 113:8505-8509. View Publication
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Nicholson-Weller A, Zaia J, Raum MG, Coligan JE. Decay accelerating factor (DAF) peptide sequences share homology with a consensus sequence found in the superfamily of structurally related complement proteins and other proteins including haptoglobin, factor XIII, beta 2-glycoprotein I, and the IL-2 receptor. Immunol Lett. 1987 Apr; 14(4):307-11. PMID: 2438213
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Wenzel TJ, Zaia J. Organic-Soluble Lanthanide Nuclear-Magnetic-Resonance Shift-Reagents for Sulfonium and Isothiouronium Salts. Anal Chem. 1987; 59:562-567. View Publication
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Wenzel TJ, Zaia J. Lanthanide Tetrakis (Beta-Diketonates) as Effective NMR Shift-Reagents for Organic Salts. J Org Chem. 1985; 50:1322-1324. View Publication