Ioannis Paschalidis | Profiles RNS

Ioannis Paschalidis, PhD Hear my name

Professor

Boston University College of Engineering

Electrical and Computer Engineering

PhD, Massachusetts Institute of Technology
MS, Massachusetts Institute of Technology

ORCID : 0000-0002-3343-2913

Director
Boston University
Rafik B. Hariri Institute for Computing and Computational Science and Engineering

Professor
Boston University School of Public Health
Biostatistics

BU Research
NIH RePORTER Research

CPS: Medium: Federated Learning for Predicting Electricity Consumption with Mixed Global/Local Models
05/01/2024 - 04/30/2027 (Multi-PI)
PI: Ioannis Paschalidis, PhD
National Science Foundation
ECCS-2317079

EMERGE: ExaEpi for elucidating Multiscale Ecosystem complex for Robust Generalized Epidemiology
10/24/2023 - 09/30/2026 (Subcontract PI)
Lawrence Berkeley National Laboratory Department of Energy

SCH: INT: Distributed Analytics for Enhancing Fertility in Families
10/01/2019 - 09/30/2025 (Multi-PI)
PI: Ioannis Paschalidis, PhD
National Science Foundation
IIS-1914792

EAGER: The Biothreats Emergence, Analysis, and Communications Network (BEACON)
07/01/2024 - 06/30/2025 (Multi-PI)
PI: Ioannis Paschalidis, PhD
National Science Foundation
DEB-2433726

PIPP Phase I: Predicting and Preventing Epidemic to Pandemic Transitions
08/01/2022 - 01/31/2025 (Multi-PI)
PI: Ioannis Paschalidis, PhD
National Science Foundation
CCF-2200052

BU Robotics and Autonomous Systems Teaching and Innovation Center (BU-RASTIC)
12/07/2021 - 12/31/2024 (Multi-PI)
PI: Ioannis Paschalidis, PhD
Massachusetts Technology Collaborative

High-Fidelity Self-Learning Tool for Residential Load and Load Flexibility Forecasting
10/01/2021 - 12/31/2024 (Subcontract PI)
Fraunhofer USA Department of Energy
DE-EE0009696

Neuro-Autonomy: Neuroscience-Inspired Perception, Navigation, and Spatial Awareness for Autonomous Robots
09/02/2019 - 12/31/2024 (Multi-PI)
PI: Ioannis Paschalidis, PhD
Department of Defense/ONR

Barr Foundation Support for BWWC 2023 Wage Gap Measurement Program
01/01/2023 - 12/31/2023 (PI)
Barr Foundation, Inc.

QuBBD: From Personalized Predictions to Better Control of Chronic Health Conditions
06/01/2018 - 12/31/2023 (Multi-PI)
PI: Ioannis Paschalidis, PhD
National Science Foundation
DMS-1664644

Showing 10 of 25 results. Show All Results

Title

Yr	Title	Project-Sub Proj	Pubs
2014	Refinement Methods for Protein Docking based on Exploring Multi-Dimensional Energ	5R01GM093147-05	42
2013	Refinement Methods for Protein Docking based on Exploring Multi-Dimensional Energ	5R01GM093147-04	42
2012	Refinement Methods for Protein Docking based on Exploring Multi-Dimensional Energ	5R01GM093147-03	42
2011	Refinement Methods for Protein Docking based on Exploring Multi-Dimensional Energ	5R01GM093147-02	42
2010		1R01GM093147-01	42
2008	Final-Stage Optimization Methods for Protein Docking Exploiting Energy Funnels	5R21GM079396-02	4
2007	Final-Stage Optimization Methods for Protein Docking Exploiting Energy Funnels	1R21GM079396-01	4

Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.

iCite Analysis Copy PMIDs To Clipboard

Yland JJ, Zad Z, Paschalidis IC, Wise LA. Reply to: Enhancing women's health management for predicting miscarriage risk: a call for broader inclusivity and holistic approaches. Fertil Steril. 2024 Aug 20.View Related Profiles.

Paschalidis, Ioannis
Wise, Lauren

PMID: 39173702

Hao B, Hu Y, Adams WG, Assoumou SA, Hsu HE, Bhadelia N, Paschalidis IC. A GPT-based EHR modeling system for unsupervised novel disease detection. J Biomed Inform. 2024 Sep; 157:104706.View Related Profiles.

Hsu, Heather
Paschalidis, Ioannis
Bhadelia, Nahid
Assoumou, Sabrina
Adams, William

PMID: 39121932

Amini S, Hao B, Yang J, Karjadi C, Kolachalama VB, Au R, Paschalidis IC. Prediction of Alzheimer's disease progression within 6 years using speech: A novel approach leveraging language models. Alzheimers Dement. 2024 Aug; 20(8):5262-5270.View Related Profiles.

Paschalidis, Ioannis
Au, Rhoda
Kolachalama, Vijaya

PMID: 38924662; PMCID: PMC11350035; DOI: 10.1002/alz.13886;

Yang J, Walker KC, Bekar-Cesaretli AA, Hao B, Bhadelia N, Joseph-McCarthy D, Paschalidis IC. Automating biomedical literature review for rapid drug discovery: Leveraging GPT-4 to expedite pandemic response. Int J Med Inform. 2024 Sep; 189:105500.View Related Profiles.

Joseph-McCarthy, Diane
Paschalidis, Ioannis
Bhadelia, Nahid

PMID: 38815316

Zad Z, Bonecker S, Wang T, Zalcberg I, Stelzer GT, Sabioni B, Gutiyama LM, Fleck JL, Paschalidis IC. Prediction of deep molecular response in chronic myeloid leukemia using supervised machine learning models. Leuk Res. 2024 Jun; 141:107502. PMID: 38636414

Yland JJ, Zad Z, Wang TR, Wesselink AK, Jiang T, Hatch EE, Paschalidis IC, Wise LA. Predictive models of miscarriage on the basis of data from a preconception cohort study. Fertil Steril. 2024 Jul; 122(1):140-149.View Related Profiles.

Wesselink, Amelia
Hatch, Elizabeth
Paschalidis, Ioannis
Wise, Lauren

PMID: 38604264

Herbst K, Wang T, Forchielli EJ, Thommes M, Paschalidis IC, Segrè D. Multi-Attribute Subset Selection enables prediction of representative phenotypes across microbial populations. Commun Biol. 2024 Apr 03; 7(1):407.View Related Profiles.

Segre, Daniel
Paschalidis, Ioannis

PMID: 38570615; PMCID: PMC10991586; DOI: 10.1038/s42003-024-06093-w;

Sotudian S, Paschalidis IC. ITNR: Inversion Transformer-based Neural Ranking for cancer drug recommendations. Comput Biol Med. 2024 Apr; 172:108312. PMID: 38503090; PMCID: PMC10990436; DOI: 10.1016/j.compbiomed.2024.108312;

Zad Z, Jiang VS, Wolf AT, Wang T, Cheng JJ, Paschalidis IC, Mahalingaiah S. Predicting polycystic ovary syndrome with machine learning algorithms from electronic health records. Front Endocrinol (Lausanne). 2024; 15:1298628.View Related Profiles.

Paschalidis, Ioannis
Mahalingaiah, Shruthi

PMID: 38356959; PMCID: PMC10866556; DOI: 10.3389/fendo.2024.1298628;

Romano MF, Shih LC, Paschalidis IC, Au R, Kolachalama VB. Large Language Models in Neurology Research and Future Practice. Neurology. 2023 Dec 04; 101(23):1058-1067.View Related Profiles.

Paschalidis, Ioannis
Shih, Ludy
Romano, Michael
Au, Rhoda
Kolachalama, Vijaya

PMID: 37816646; PMCID: PMC10752640; DOI: 10.1212/WNL.0000000000207967;

Showing 10 of 74 results. Show More

Fefferman NH, McAlister JS, Akpa BS, Akwataghibe K, Azad FT, Barkley K, Bleichrodt A, Blum MJ, Bourouiba L, Bromberg Y, Candan KS, Chowell G, Clancey E, Cothran FA, DeWitte SN, Fernandez P, Finnoff D, Flaherty DT, Gibson NL, Harris N, He Q, Lofgren ET, Miller DL, Moody J, Muccio K, Nunn CL, Pape? M, Paschalidis IC, Pasquale DK, Reed JM, Rogers MB, Schreiner CL, Strand EB, Swanson CS, Szabo-Rogers HL, Ryan SJ. A New Paradigm for Pandemic Preparedness. Curr Epidemiol Rep. 2023 Dec; 10(4):240-251. PMID: 39055963; PMCID: PMC11271254; DOI: 10.1007/s40471-023-00336-w;

Zad Z, Jiang VS, Wolf AT, Wang T, Cheng JJ, Paschalidis IC, Mahalingaiah S. Predicting polycystic ovary syndrome (PCOS) with machine learning algorithms from electronic health records. medRxiv. 2023 Oct 01.View Related Profiles.

Paschalidis, Ioannis
Mahalingaiah, Shruthi

PMID: 37577593; PMCID: PMC10418575; DOI: 10.1101/2023.07.27.23293255;

Hashemi N, Hao B, Ignatov M, Paschalidis IC, Vakili P, Vajda S, Kozakov D. Improved prediction of MHC-peptide binding using protein language models. Front Bioinform. 2023; 3:1207380.View Related Profiles.

Paschalidis, Ioannis
Vajda, Sandor

PMID: 37663788; PMCID: PMC10469926; DOI: 10.3389/fbinf.2023.1207380;

Sotudian S, Chen R, Paschalidis IC. Distributionally robust learning-to-rank under the Wasserstein metric. PLoS One. 2023; 18(3):e0283574. PMID: 36996130; PMCID: PMC10062629; DOI: 10.1371/journal.pone.0283574;

Hu Y, Huerta J, Cordella N, Mishuris RG, Paschalidis IC. Personalized hypertension treatment recommendations by a data-driven model. BMC Med Inform Decis Mak. 2023 Mar 01; 23(1):44.View Related Profiles.

Paschalidis, Ioannis
Cordella, Nicholas
Mishuris, Rebecca

PMID: 36859187; PMCID: PMC9979505; DOI: 10.1186/s12911-023-02137-z;

Karjadi C, Xue C, Cordella C, Kiran S, Paschalidis IC, Au R, Kolachalama VB. Fusion of Low-Level Descriptors of Digital Voice Recordings for Dementia Assessment. J Alzheimers Dis. 2023; 96(2):507-514.View Related Profiles.

Paschalidis, Ioannis
Au, Rhoda
Kolachalama, Vijaya

PMID: 37840494; PMCID: PMC10657667; DOI: 10.3233/JAD-230560;

Sotudian S, Afran A, LeBedis CA, Rives AF, Paschalidis IC, Fishman MDC. Social determinants of health and the prediction of missed breast imaging appointments. BMC Health Serv Res. 2022 Nov 30; 22(1):1454.View Related Profiles.

Rives, Anna
LeBedis, Christina
Paschalidis, Ioannis

PMID: 36451240; PMCID: PMC9714014; DOI: 10.1186/s12913-022-08784-8;

Sotudian S, Paschalidis IC. Machine Learning for Pharmacogenomics and Personalized Medicine: A Ranking Model for Drug Sensitivity Prediction. IEEE/ACM Trans Comput Biol Bioinform. 2022; 19(4):2324-2333. PMID: 34043512; PMCID: PMC9642333; DOI: 10.1109/TCBB.2021.3084562;

Amini S, Hao B, Zhang L, Song M, Gupta A, Karjadi C, Kolachalama VB, Au R, Paschalidis IC. Automated detection of mild cognitive impairment and dementia from voice recordings: A natural language processing approach. Alzheimers Dement. 2023 Mar; 19(3):946-955.View Related Profiles.

Paschalidis, Ioannis
Au, Rhoda
Kolachalama, Vijaya

PMID: 35796399; PMCID: PMC10148688; DOI: 10.1002/alz.12721;

Hao B, Hu Y, Sotudian S, Zad Z, Adams WG, Assoumou SA, Hsu H, Mishuris RG, Paschalidis IC. Development and validation of predictive models for COVID-19 outcomes in a safety-net hospital population. J Am Med Inform Assoc. 2022 Jun 14; 29(7):1253-1262.View Related Profiles.

Hsu, Heather
Paschalidis, Ioannis
Mishuris, Rebecca
Assoumou, Sabrina
Adams, William

PMID: 35441692; PMCID: PMC9129120; DOI: 10.1093/jamia/ocac062;

Yland JJ, Wang T, Zad Z, Willis SK, Wang TR, Wesselink AK, Jiang T, Hatch EE, Wise LA, Paschalidis IC. Predictive models of pregnancy based on data from a preconception cohort study. Hum Reprod. 2022 Mar 01; 37(3):565-576.View Related Profiles.

Wesselink, Amelia
Hatch, Elizabeth
Paschalidis, Ioannis
Wise, Lauren

PMID: 35024824; PMCID: PMC8888990; DOI: 10.1093/humrep/deab280;

Xu T, de Figueiredo Veiga A, Hammer KC, Paschalidis IC, Mahalingaiah S. Informative predictors of pregnancy after first IVF cycle using eIVF practice highway electronic health records. Sci Rep. 2022 01 17; 12(1):839.View Related Profiles.

Paschalidis, Ioannis
Mahalingaiah, Shruthi

PMID: 35039614; PMCID: PMC8763861; DOI: 10.1038/s41598-022-04814-x;

Au R, Kolachalama VB, Paschalidis IC. Redefining and Validating Digital Biomarkers as Fluid, Dynamic Multi-Dimensional Digital Signal Patterns. Front Digit Health. 2021; 3:751629.View Related Profiles.

Paschalidis, Ioannis
Au, Rhoda
Kolachalama, Vijaya

PMID: 35146485; PMCID: PMC8822623; DOI: 10.3389/fdgth.2021.751629;

Pu S, Olshevsky A, Paschalidis IC. A Sharp Estimate on the Transient Time of Distributed Stochastic Gradient Descent. IEEE Trans Automat Contr. 2022 Nov; 67(11):5900-5915. PMID: 37284602; PMCID: PMC10241409; DOI: 10.1109/tac.2021.3126253;

Wollenstein-Betech S, Salazar M, Houshmand A, Pavone M, Paschalidis IC, Cassandras CG. Routing and Rebalancing Intermodal Autonomous Mobility-on-Demand Systems in Mixed Traffic. IEEE trans Intell Transp Syst. 2022 Aug; 23(8):12263-12275. PMID: 37124136; PMCID: PMC10147341; DOI: 10.1109/tits.2021.3112106;

Zhao Y, Paschalidis IC, Hu J. The impact of payer status on hospital admissions: evidence from an academic medical center. BMC Health Serv Res. 2021 Sep 07; 21(1):930. PMID: 34493261; PMCID: PMC8425077; DOI: 10.1186/s12913-021-06886-3;

Xue C, Karjadi C, Paschalidis IC, Au R, Kolachalama VB. Detection of dementia on voice recordings using deep learning: a Framingham Heart Study. Alzheimers Res Ther. 2021 08 31; 13(1):146.View Related Profiles.

Paschalidis, Ioannis
Au, Rhoda
Kolachalama, Vijaya

PMID: 34465384; PMCID: PMC8409004; DOI: 10.1186/s13195-021-00888-3;

Zhang Y, Wilson DC, Paschalidis IC, Coskun AK. HPC Data Center Participation in Demand Response: an Adaptive Policy with QoS Assurance. IEEE Trans Sustain Comput. 2022; 7(1):157-171. PMID: 37346464; PMCID: PMC10284567; DOI: 10.1109/tsusc.2021.3077254;

Sotudian S, Desta IT, Hashemi N, Zarbafian S, Kozakov D, Vakili P, Vajda S, Paschalidis IC. Improved cluster ranking in protein-protein docking using a regression approach. Comput Struct Biotechnol J. 2021; 19:2269-2278.View Related Profiles.

Paschalidis, Ioannis
Vajda, Sandor

PMID: 33995918; PMCID: PMC8102165; DOI: 10.1016/j.csbj.2021.04.028;

Amini S, Zhang L, Hao B, Gupta A, Song M, Karjadi C, Lin H, Kolachalama VB, Au R, Paschalidis IC. An Artificial Intelligence-Assisted Method for Dementia Detection Using Images from the Clock Drawing Test. J Alzheimers Dis. 2021; 83(2):581-589.View Related Profiles.

Lin, Honghuang
Paschalidis, Ioannis
Au, Rhoda
Kolachalama, Vijaya

PMID: 34334396; PMCID: PMC9049046; DOI: 10.3233/JAD-210299;

Wang T, Paschalidis A, Liu Q, Liu Y, Yuan Y, Paschalidis IC. Predictive Models of Mortality for Hospitalized Patients With COVID-19: Retrospective Cohort Study. JMIR Med Inform. 2020 Oct 15; 8(10):e21788. PMID: 33055061; PMCID: PMC7572117; DOI: 10.2196/21788;

Wollenstein-Betech S, Silva AAB, Fleck JL, Cassandras CG, Paschalidis IC. Physiological and socioeconomic characteristics predict COVID-19 mortality and resource utilization in Brazil. PLoS One. 2020; 15(10):e0240346. PMID: 33052960; PMCID: PMC7556459; DOI: 10.1371/journal.pone.0240346;

Hao B, Sotudian S, Wang T, Xu T, Hu Y, Gaitanidis A, Breen K, Velmahos GC, Paschalidis IC. Early prediction of level-of-care requirements in patients with COVID-19. Elife. 2020 Oct 12; 9. PMID: 33044170; PMCID: PMC7595731; DOI: 10.7554/eLife.60519;

Bertsimas D, Li ML, Paschalidis IC, Wang T. Prescriptive analytics for reducing 30-day hospital readmissions after general surgery. PLoS One. 2020; 15(9):e0238118. PMID: 32903282; PMCID: PMC7480861; DOI: 10.1371/journal.pone.0238118;

Wollenstein-Betech S, Cassandras CG, Paschalidis IC. Personalized predictive models for symptomatic COVID-19 patients using basic preconditions: Hospitalizations, mortality, and the need for an ICU or ventilator. Int J Med Inform. 2020 Oct; 142:104258. PMID: 32927229; PMCID: PMC7442577; DOI: 10.1016/j.ijmedinf.2020.104258;

Xu T, Zhu H, Paschalidis IC. Learning parametric policies and transition probability models of markov decision processes from data. Eur J Control. 2021 Jan; 57:68-75. PMID: 33716408; PMCID: PMC7944408; DOI: 10.1016/j.ejcon.2020.04.003;

Wollenstein-Betech S, Cassandras CG, Paschalidis IC. Personalized Predictive Models for Symptomatic COVID-19 Patients Using Basic Preconditions: Hospitalizations, Mortality, and the Need for an ICU or Ventilator. medRxiv. 2020 May 08. PMID: 32511489; PMCID: PMC7273257; DOI: 10.1101/2020.05.03.20089813;

Pu S, Olshevsky A, Paschalidis IC. Asymptotic Network Independence in Distributed Stochastic Optimization for Machine Learning. IEEE Signal Process Mag. 2020 May; 37(3):114-122. PMID: 33746471; PMCID: PMC7977622; DOI: 10.1109/msp.2020.2975212;

Zhu H, Paschalidis IC, Chang A, Stern CE, Hasselmo ME. A neural circuit model for a contextual association task inspired by recommender systems. Hippocampus. 2020 04; 30(4):384-395.View Related Profiles.

Paschalidis, Ioannis
Hasselmo, Michael

PMID: 32057161; PMCID: PMC8494425; DOI: 10.1002/hipo.23194;

Zhu H, Liu H, Ataei A, Munk Y, Daniel T, Paschalidis IC. Learning from animals: How to Navigate Complex Terrains. PLoS Comput Biol. 2020 Jan; 16(1):e1007452. PMID: 31917816; PMCID: PMC6952082; DOI: 10.1371/journal.pcbi.1007452;

Spiridonoff A, Olshevsky A, Paschalidis IC. Robust Asynchronous Stochastic Gradient-Push: Asymptotically Optimal and Network-Independent Performance for Strongly Convex Functions. J Mach Learn Res. 2020; 21. PMID: 32989377; PMCID: PMC7520166

Chen R, Paschalidis IC, Hatabu H, Valtchinov VI, Siegelman J. Detection of unwarranted CT radiation exposure from patient and imaging protocol meta-data using regularized regression. Eur J Radiol Open. 2019; 6:206-211. PMID: 31194104; PMCID: PMC6551377; DOI: 10.1016/j.ejro.2019.04.007;

Zhu H, Paschalidis IC, Hall C, Tahmasebi A. Context-Driven Concept Annotation in Radiology Reports: Anatomical Phrase Labeling. AMIA Jt Summits Transl Sci Proc. 2019; 2019:232-241. PMID: 31258975; PMCID: PMC6568085

Thommes M, Wang T, Zhao Q, Paschalidis IC, Segrè D. Designing Metabolic Division of Labor in Microbial Communities. mSystems. 2019; 4(2).View Related Profiles.

Segre, Daniel
Paschalidis, Ioannis

PMID: 30984871

Brisimi TS, Xu T, Wang T, Dai W, Paschalidis IC. Predicting diabetes-related hospitalizations based on electronic health records. Stat Methods Med Res. 2019 Dec; 28(12):3667-3682. PMID: 30474497

Zhu H, Paschalidis IC, Hasselmo ME. Neural circuits for learning context-dependent associations of stimuli. Neural Netw. 2018 Nov; 107:48-60.View Related Profiles.

Paschalidis, Ioannis
Hasselmo, Michael

PMID: 30177226

Zarbafian S, Moghadasi M, Roshandelpoor A, Nan F, Li K, Vakli P, Vajda S, Kozakov D, Paschalidis IC. Protein docking refinement by convex underestimation in the low-dimensional subspace of encounter complexes. Sci Rep. 2018 04 12; 8(1):5896.View Related Profiles.

Paschalidis, Ioannis
Vajda, Sandor

PMID: 29650980; PMCID: PMC5955889; DOI: 10.1038/s41598-018-23982-3;

Brisimi TS, Xu T, Wang T, Dai W, Adams WG, Paschalidis IC. Predicting Chronic Disease Hospitalizations from Electronic Health Records: An Interpretable Classification Approach. Proc IEEE Inst Electr Electron Eng. 2018 Apr; 106(4):690-707.View Related Profiles.

Paschalidis, Ioannis
Adams, William

PMID: 30886441; PMCID: PMC6419763; DOI: 10.1109/JPROC.2017.2789319;

Brisimi TS, Chen R, Mela T, Olshevsky A, Paschalidis IC, Shi W. Federated learning of predictive models from federated Electronic Health Records. Int J Med Inform. 2018 Apr; 112:59-67. PMID: 29500022

Chen R, Paschalidis IC. A Robust Learning Approach for Regression Models Based on Distributionally Robust Optimization. J Mach Learn Res. 2018 Jan; 19(1):517-564. PMID: 34421397

Zhao Q, Stettner AI, Reznik E, Paschalidis ICh, Segrè D. Mapping the landscape of metabolic goals of a cell. Genome Biol. 2016 May 23; 17(1):109.View Related Profiles.

Segre, Daniel
Paschalidis, Ioannis

PMID: 27215445

Kang SC, Brisimi TS, Paschalidis IC. Distribution-dependent robust linear optimization with applications to inventory control. Ann Oper Res. 2015 Aug 01; 231(1):229-263. PMID: 26347579

Xia B, Mamonov A, Leysen S, Allen KN, Strelkov SV, Paschalidis ICh, Vajda S, Kozakov D. Accounting for observed small angle X-ray scattering profile in the protein-protein docking server ClusPro. J Comput Chem. 2015 Jul 30; 36(20):1568-72.View Related Profiles.

Paschalidis, Ioannis
Allen, Karen
Vajda, Sandor

PMID: 26095982; PMCID: PMC4485579; DOI: 10.1002/jcc.23952;

Moghadasi M, Mirzaei H, Mamonov A, Vakili P, Vajda S, Paschalidis ICh, Kozakov D. The impact of side-chain packing on protein docking refinement. J Chem Inf Model. 2015 Apr 27; 55(4):872-81.View Related Profiles.

Paschalidis, Ioannis
Vajda, Sandor

PMID: 25714358; PMCID: PMC4734134; DOI: 10.1021/ci500380a;

Mirzaei H, Zarbafian S, Villar E, Mottarella S, Beglov D, Vajda S, Paschalidis ICh, Vakili P, Kozakov D. Energy Minimization on Manifolds for Docking Flexible Molecules. J Chem Theory Comput. 2015 Mar 10; 11(3):1063-76.View Related Profiles.

Beglov, Dmitri
Paschalidis, Ioannis
Vajda, Sandor

PMID: 26478722; PMCID: PMC4606885; DOI: 10.1021/ct500155t;

Edrich T, Frendl G, Michaud G, Paschalidis ICh. Heparin requirements for full anticoagulation are higher for patients on dabigatran than for those on warfarin - a model-based study. Clin Pharmacol. 2015; 7:19-27. PMID: 25709508

Vakili P, Mirzaei H, Zarbafian S, Paschalidis IC, Kozakov D, Vajda S. Optimization on the space of rigid and flexible motions: an alternative manifold optimization approach. Proc IEEE Conf Decis Control. 2014 Dec; 2014:5825-5830.View Related Profiles.

Paschalidis, Ioannis
Vajda, Sandor

PMID: 25774073; PMCID: PMC4357846; DOI: 10.1109/CDC.2014.7040301;

Dai W, Brisimi TS, Adams WG, Mela T, Saligrama V, Paschalidis ICh. Prediction of hospitalization due to heart diseases by supervised learning methods. Int J Med Inform. 2015 Mar; 84(3):189-97.View Related Profiles.

Paschalidis, Ioannis
Adams, William

PMID: 25497295; PMCID: PMC4314395; DOI: 10.1016/j.ijmedinf.2014.10.002;

Zhao Q, Edrich T, Paschalidis IC. Adaptive control of bivalirudin in the cardiac intensive care unit. IEEE Trans Biomed Eng. 2015 Feb; 62(2):638-647. PMID: 25314695

Chowdhury R, Beglov D, Moghadasi M, Paschalidis IC, Vakili P, Vajda S, Bajaj C, Kozakov D. Efficient Maintenance and Update of Nonbonded Lists in Macromolecular Simulations. J Chem Theory Comput. 2014 Oct 14; 10(10):4449-4454.View Related Profiles.

Beglov, Dmitri
Paschalidis, Ioannis
Vajda, Sandor

PMID: 25328494; PMCID: PMC4196749; DOI: 10.1021/ct400474w;

Paschalidis IC, Huang F, Lai W. A Message-Passing Algorithm for Wireless Network Scheduling. IEEE ACM Trans Netw. 2015 Oct; 23(5):1528-1541. PMID: 26752942

Kozakov D, Li K, Hall DR, Beglov D, Zheng J, Vakili P, Schueler-Furman O, Paschalidis ICh, Clore GM, Vajda S. Encounter complexes and dimensionality reduction in protein-protein association. Elife. 2014 Apr 08; 3:e01370.View Related Profiles.

Beglov, Dmitri
Paschalidis, Ioannis
Vajda, Sandor

PMID: 24714491; PMCID: PMC3978769; DOI: 10.7554/eLife.01370;

Zhao Q, Edrich T, Paschalidis ICh. Predicting and evaluating the effect of bivalirudin in cardiac surgical patients. IEEE Trans Biomed Eng. 2014 Feb; 61(2):435-43. PMID: 24013828

Moghadasi M, Kozakov D, Vakili P, Vajda S, Paschalidis IC. A New Distributed Algorithm for Side-Chain Positioning in the Process of Protein Docking* Proc IEEE Conf Decis Control. 2013; 739-744.View Related Profiles.

Paschalidis, Ioannis
Vajda, Sandor

PMID: 24844567; PMCID: PMC4024309; DOI: 10.1109/CDC.2013.6759970;

Zhao Q, Edrich T, Paschalidis IC. A Predictive Model for the Anticoagulant Bivalirudin Administered to Cardiac Surgical Patients. Proc IEEE Conf Decis Control. 2013; 121-126. PMID: 24781880

Mirzaei H, Villar E, Mottarella S, Beglov D, Paschalidis IC, Vajda S, Kozakov D, Vakili P. Flexible Refinement of Protein-Ligand Docking on Manifolds. Proc IEEE Conf Decis Control. 2013; 1392-1397.View Related Profiles.

Beglov, Dmitri
Paschalidis, Ioannis
Vajda, Sandor

PMID: 24830567; PMCID: PMC4019453; DOI: 10.1109/CDC.2013.6760077;

Bertsimas D, Gupta V, Paschalidis IC. Inverse Optimization: A New Perspective on the Black-Litterman Model. Oper Res. 2012 Dec 11; 60(6):1389-1403. PMID: 25382873

Mirzaei H, Kozakov D, Beglov D, Paschalidis IC, Vajda S, Vakili P. A New Approach to Rigid Body Minimization with Application to Molecular Docking. Proc IEEE Conf Decis Control. 2012 Dec; 2983-2988.View Related Profiles.

Beglov, Dmitri
Paschalidis, Ioannis
Vajda, Sandor

PMID: 24763338; PMCID: PMC3992991; DOI: 10.1109/CDC.2012.6426267;

Mirzaei H, Beglov D, Paschalidis IC, Vajda S, Vakili P, Kozakov D. Rigid Body Energy Minimization on Manifolds for Molecular Docking. J Chem Theory Comput. 2012 Nov 13; 8(11):4374-4380.View Related Profiles.

Beglov, Dmitri
Paschalidis, Ioannis
Vajda, Sandor

PMID: 23382659; PMCID: PMC3561712; DOI: 10.1021/ct300272j;

Moghadasi M, Kozakov D, Mamonov AB, Vakili P, Vajda S, Paschalidis IC. A Message Passing Approach to Side Chain Positioning with Applications in Protein Docking Refinement. Proc IEEE Conf Decis Control. 2012; 2310-2315.View Related Profiles.

Paschalidis, Ioannis
Vajda, Sandor

PMID: 23515575; PMCID: PMC3600151; DOI: 10.1109/cdc.2012.6426600;

Kozakov D, Hall DR, Beglov D, Brenke R, Comeau SR, Shen Y, Li K, Zheng J, Vakili P, Paschalidis ICh, Vajda S. Achieving reliability and high accuracy in automated protein docking: ClusPro, PIPER, SDU, and stability analysis in CAPRI rounds 13-19. Proteins. 2010 Nov 15; 78(15):3124-30.View Related Profiles.

Beglov, Dmitri
Paschalidis, Ioannis
Vajda, Sandor

PMID: 20818657; PMCID: PMC3027207; DOI: 10.1002/prot.22835;

Shen Y, Paschalidis ICh, Vakili P, Vajda S. Protein docking by the underestimation of free energy funnels in the space of encounter complexes. PLoS Comput Biol. 2008 Oct; 4(10):e1000191.View Related Profiles.

Paschalidis, Ioannis
Vajda, Sandor

PMID: 18846200; PMCID: PMC2538569; DOI: 10.1371/journal.pcbi.1000191;

Paschalidis IC, Shen Y, Vakili P, Vajda S. SDU: A Semidefinite Programming-Based Underestimation Method for Stochastic Global Optimization in Protein Docking. IEEE Trans Automat Contr. 2007 Apr 01; 52(4):664-676.View Related Profiles.

Paschalidis, Ioannis
Vajda, Sandor

PMID: 19759849

Paschalidis ICh, Shen Y, Vakili P, Vajda S. Protein-protein docking with reduced potentials by exploiting multi-dimensional energy funnels. Conf Proc IEEE Eng Med Biol Soc. 2006; 2006:5330-3.View Related Profiles.

Paschalidis, Ioannis
Vajda, Sandor

PMID: 17946298; PMCID: PMC2446401; DOI: 10.1109/IEMBS.2006.260790;

This graph shows the total number of publications by year, by first, middle/unknown, or last author.

Bar chart showing 74 publications over 16 distinct years, with a maximum of 11 publications in 2020

Bar chart showing 74 publications over 16 distinct years, with a maximum of 11 publications in 2020

Year	Publications
2006	1
2007	1
2008	1
2010	1
2012	4
2013	3
2014	7
2015	5
2016	1
2018	6
2019	3
2020	11
2021	7
2022	7
2023	7
2024	9

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2022 International Federation of Automatic Control (IFAC): Fellow

2022 Boston University: Distinguished Professor of Engineering

2020 College of Engineering, Boston University: Charles DeLisi Award and Lecturer

2014 IEEE: Fellow

2011-2016 College of Engineering, Boston University: Distinguished Faculty Fellow

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