Prasad Patil | Profiles RNS

Prasad Patil, PhD

Assistant Professor

Boston University School of Public Health

Biostatistics

PhD, Johns Hopkins University
BA, New York University

Websites

	LinkedIn
	Prasad Patil
	Google Scholar
	ResearchGate
	Harvard T. H. Chan School of Public Health

ORCID : 0000-0002-3544-2656

Dr. Prasad Patil studies machine learning applications in public health and the development of statistical methods focused on reproducibility and replicability. Dr. Patil has specific interest in techniques for combining data from and/or models trained in multiple studies to improve generalizbility of predictive models. Some of his application areas include: gene signatures for assessing Tuberculosis stage, multi-site modeling of air pollution spikes caused by airplane activity, opioid overdose risk modeling in incarcerated populations, longitudinal modleing of well-being indicies, and survey weight estimation for convenience samples of vulnerable/underrepresented populations.

Dr. Patil received his PhD in Biostatistics from the Johns Hopkins Bloomberg School of Public Health and completed a postdoctoral research fellowship at the Harvard Chan School of Public Health Department of Biostatistics/Dana-Farber Cancer Institute Department of Data Science.

BU Research

Removing batch effects in high-throughput biomedical studies
09/27/2023 - 08/31/2027 (Multi-PI)
PI: Prasad Patil, PhD
Rutgers, The State University of New Jersey NIH NIGMS
2R01GM127430-06A1

Development of a novel community-based high-performance surveillance network for drug use
11/01/2021 - 07/31/2024 (Subcontract PI)
Regents of the University of Colorado, on behalf of The University of Colorado Denver NIH NIDA
7DP2DA051864-02

Title

Yr	Title	Project-Sub Proj	Pubs

Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.

iCite Analysis Copy PMIDs To Clipboard

Wang X, VanValkenberg A, Odom AR, Ellner JJ, Hochberg NS, Salgame P, Patil P, Johnson WE. Comparison of gene set scoring methods for reproducible evaluation of tuberculosis gene signatures. BMC Infect Dis. 2024 Jun 20; 24(1):610.View Related Profiles.

Odom, Aubrey
Hochberg, Natasha
Patil, Prasad

PMID: 38902649; PMCID: PMC11191245; DOI: 10.1186/s12879-024-09457-z;

Yamkovoy K, Patil P, Dunn D, Erdman E, Bernson D, Swathi PA, Nall SK, Zhang Y, Wang J, Brinkley-Rubinstein L, LeMasters KH, White LF, Barocas JA. Using decision tree models and comprehensive statewide data to predict opioid overdoses following prison release. Ann Epidemiol. 2024 Jun; 94:81-90.View Related Profiles.

Barocas, Joshua
White, Laura
Patil, Prasad

PMID: 38710239; PMCID: PMC11117432; DOI: 10.1016/j.annepidem.2024.04.011;

Nall SK, Jurecka C, Ammons A, Rodriguez A, Craft B, Waleed C, Dias D, Henderson J, Boyer J, Yamkovoy K, Swathi PA, Patil P, Behne F, LeMasters K, Brinkley-Rubinstein L, Barocas JA. Identifying structural risk factors for overdose following incarceration: a concept mapping study. Health Justice. 2024 Mar 12; 12(1):11.View Related Profiles.

Barocas, Joshua
Patil, Prasad

PMID: 38472497; PMCID: PMC10936003; DOI: 10.1186/s40352-024-00265-w;

Haley BM, Patil P, Levy JI, Spangler KR, Tieskens KF, Carnes F, Peng X, Klevens RM, Troppy TS, Fabian MP, Lane KJ, Leibler JH. Evaluating COVID-19 Risk to Essential Workers by Occupational Group: A Case Study in Massachusetts. J Community Health. 2024 Feb; 49(1):91-99.View Related Profiles.

Leibler, Jessica
Levy, Jonathan
Spangler, Keith
Lane, Kevin
Fabian, Maria
Patil, Prasad

PMID: 37507525; PMCID: PMC10823035; DOI: 10.1007/s10900-023-01249-x;

Patil P, Peng X, Haley BM, Spangler KR, Tieskens KF, Lane KJ, Carnes F, Fabian MP, Klevens RM, Troppy TS, Leibler JH, Levy JI. Influence of geospatial resolution on sociodemographic predictors of COVID-19 in Massachusetts. Ann Epidemiol. 2023 Apr; 80:62-68.e3.View Related Profiles.

Leibler, Jessica
Levy, Jonathan
Spangler, Keith
Lane, Kevin
Fabian, Maria
Patil, Prasad

PMID: 36822278; PMCID: PMC9942453; DOI: 10.1016/j.annepidem.2023.02.007;

Wang X, VanValkenberg A, Odom-Mabey AR, Ellner JJ, Hochberg NS, Salgame P, Patil P, Johnson WE. Comparison of gene set scoring methods for reproducible evaluation of multiple tuberculosis gene signatures. bioRxiv. 2023 Jan 30.View Related Profiles.

Hochberg, Natasha
Patil, Prasad

PMID: 36711818; PMCID: PMC9882404; DOI: 10.1101/2023.01.19.520627;

Wu Y, Ren B, Patil P. A pairwise strategy for imputing predictive features when combining multiple datasets. Bioinformatics. 2023 Jan 01; 39(1). PMID: 36576001; PMCID: PMC9835467; DOI: 10.1093/bioinformatics/btac839;

Loewinger G, Patil P, Kishida KT, Parmigiani G. Hierarchical resampling for bagging in multistudy prediction with applications to human neurochemical sensing. Ann Appl Stat. 2022 Dec; 16(4):2145-2165. PMID: 36274786; PMCID: PMC9586160; DOI: 10.1214/21-aoas1574;

Schmidt IM, Myrick S, Liu J, Verma A, Srivastava A, Palsson R, Onul IF, Stillman IE, Avillach C, Patil P, Waikar SS. The use of plasma biomarker-derived clusters for clinicopathologic phenotyping: results from the Boston Kidney Biopsy Cohort. Clin Kidney J. 2023 Jan; 16(1):90-99.View Related Profiles.

Verma, Ashish
Avillach, Claire
Schmidt, Insa
Patil, Prasad
Waikar, Sushrut

PMID: 36726432; PMCID: PMC9871860; DOI: 10.1093/ckj/sfac202;

Spangler KR, Levy JI, Fabian MP, Haley BM, Carnes F, Patil P, Tieskens K, Klevens RM, Erdman EA, Troppy TS, Leibler JH, Lane KJ. Missing Race and Ethnicity Data among COVID-19 Cases in Massachusetts. J Racial Ethn Health Disparities. 2023 Aug; 10(4):2071-2080.View Related Profiles.

Leibler, Jessica
Levy, Jonathan
Spangler, Keith
Lane, Kevin
Fabian, Maria
Patil, Prasad

PMID: 36056195; PMCID: PMC9439275; DOI: 10.1007/s40615-022-01387-3;

Showing 10 of 30 results. Show More

Mueller SC, Hudda N, Levy JI, Durant JL, Patil P, Lee NF, Weiss I, Tatro T, Duhl T, Lane K. Changes in Ultrafine Particle Concentrations near a Major Airport Following Reduced Transportation Activity during the COVID-19 Pandemic. Environ Sci Technol Lett. 2022 Sep 13; 9(9):706-711.View Related Profiles.

Levy, Jonathan
Lane, Kevin
Patil, Prasad

PMID: 36118960; PMCID: PMC9477096; DOI: 10.1021/acs.estlett.2c00322;

Flam-Ross JM, Lown J, Patil P, White LF, Wang J, Perry A, Bailer D, McKenzie M, Thigpen A, Newman R, Lincoln M, Mckinney T, Bernson D, Barocas JA. Factors associated with opioid-involved overdose among previously incarcerated people in the U.S.: A community engaged narrative review. Int J Drug Policy. 2022 02; 100:103534.View Related Profiles.

Barocas, Joshua
White, Laura
Patil, Prasad

PMID: 34896932; PMCID: PMC8810696; DOI: 10.1016/j.drugpo.2021.103534;

Spangler KR, Patil P, Peng X, Levy JI, Lane KJ, Tieskens KF, Carnes F, Klevens RM, Erdman EA, Troppy TS, Fabian MP, Leibler JH. Community predictors of COVID-19 cases and deaths in Massachusetts: Evaluating changes over time using geospatially refined data. Influenza Other Respir Viruses. 2022 03; 16(2):213-221.View Related Profiles.

Leibler, Jessica
Levy, Jonathan
Spangler, Keith
Lane, Kevin
Fabian, Maria
Patil, Prasad

PMID: 34761531; PMCID: PMC8652977; DOI: 10.1111/irv.12926;

Tieskens KF, Patil P, Levy JI, Brochu P, Lane KJ, Fabian MP, Carnes F, Haley BM, Spangler KR, Leibler JH. Time-varying associations between COVID-19 case incidence and community-level sociodemographic, occupational, environmental, and mobility risk factors in Massachusetts. BMC Infect Dis. 2021 Jul 16; 21(1):686.View Related Profiles.

Leibler, Jessica
Levy, Jonathan
Spangler, Keith
Lane, Kevin
Fabian, Maria
Patil, Prasad

PMID: 34271870; PMCID: PMC8283097; DOI: 10.1186/s12879-021-06389-w;

Zhang Y, Patil P, Johnson WE, Parmigiani G. Robustifying genomic classifiers to batch effects via ensemble learning. Bioinformatics. 2021 07 12; 37(11):1521-1527.View Related Profiles.

Patil, Prasad
Johnson, William

PMID: 33245114; PMCID: PMC8485848; DOI: 10.1093/bioinformatics/btaa986;

Tieskens K, Patil P, Levy JI, Brochu P, Lane KJ, Fabian MP, Carnes F, Haley BM, Spangler KR, Leibler JH. Time-varying associations between COVID-19 case incidence and community-level sociodemographic, occupational, environmental, and mobility risk factors in Massachusetts. Res Sq. 2021 Feb 17.View Related Profiles.

Lane, Kevin
Fabian, Maria
Patil, Prasad

PMID: 33619475; PMCID: PMC7899469; DOI: 10.21203/rs.3.rs-237622/v1;

Nudel J, Bishara AM, de Geus SWL, Patil P, Srinivasan J, Hess DT, Woodson J. Development and validation of machine learning models to predict gastrointestinal leak and venous thromboembolism after weight loss surgery: an analysis of the MBSAQIP database. Surg Endosc. 2021 01; 35(1):182-191.View Related Profiles.

Hess, Donald
Nudel, Jacob
Woodson, Jonathan
Patil, Prasad

PMID: 31953733; PMCID: PMC9278895; DOI: 10.1007/s00464-020-07378-x;

Ramchandran M, Patil P, Parmigiani G. Tree-Weighting for Multi-Study Ensemble Learners. Pac Symp Biocomput. 2020; 25:451-462. PMID: 31797618; PMCID: PMC6980320

Patil P, Peng RD, Leek JT. Publisher Correction: A visual tool for defining reproducibility and replicability. Nat Hum Behav. 2019 Aug; 3(8):886. PMID: 31358976

Patil P, Peng RD, Leek JT. A visual tool for defining reproducibility and replicability. Nat Hum Behav. 2019 07; 3(7):650-652. PMID: 31209370

Patil P, Parmigiani G. Training replicable predictors in multiple studies. Proc Natl Acad Sci U S A. 2018 03 13; 115(11):2578-2583. PMID: 29531060; PMCID: PMC5856504; DOI: 10.1073/pnas.1708283115;

Patil P, Peng RD, Leek JT. What Should Researchers Expect When They Replicate Studies? A Statistical View of Replicability in Psychological Science. Perspect Psychol Sci. 2016 07; 11(4):539-44. PMID: 27474140; PMCID: PMC4968573; DOI: 10.1177/1745691616646366;

Patil P, Colantuoni E, Leek JT, Rosenblum M. Genomic and clinical predictors for improving estimator precision in randomized trials of breast cancer treatments. Contemp Clin Trials Commun. 2016 Aug 15; 3:48-54. PMID: 29736456; PMCID: PMC5935844; DOI: 10.1016/j.conctc.2016.03.001;

Patil P, Bachant-Winner PO, Haibe-Kains B, Leek JT. Test set bias affects reproducibility of gene signatures. Bioinformatics. 2015 Jul 15; 31(14):2318-23. PMID: 25788628; PMCID: PMC4495301; DOI: 10.1093/bioinformatics/btv157;

Patil P, Leek JT . Discussion of “Visualizing statistical models: Removing the blindfold”. Statistical Analysis and Data Mining: The ASA Data Science Journal. 2015; 8(4):240-241.

Hyland PL, Burke LS, Pfeiffer RM, Rotunno M, Sun D, Patil P, Wu X, Tucker MA, Goldstein AM, Yang XR. Constitutional promoter methylation and risk of familial melanoma. Epigenetics. 2014 May; 9(5):685-92. PMID: 24762620; PMCID: PMC4063827; DOI: 10.4161/epi.28151;

Fusaro VA, Patil P, Chi CL, Contant CF, Tonellato PJ. A systems approach to designing effective clinical trials using simulations. Circulation. 2013 Jan 29; 127(4):517-26. PMID: 23261867; PMCID: PMC3747989; DOI: 10.1161/CIRCULATIONAHA.112.123034;

Chi CL, Fusaro VA, Patil P, Crawford MA, Content CF, Tonellato PJ. A simulation platform to examine heterogeneity influence on treatment. AMIA Jt Summits Transl Sci Proc. 2012; 2012:19-24. PMID: 22779042; PMCID: PMC3392060

Fusaro VA, Patil P, Gafni E, Wall DP, Tonellato PJ. Biomedical cloud computing with Amazon Web Services. PLoS Comput Biol. 2011 Aug; 7(8):e1002147. PMID: 21901085; PMCID: PMC3161908; DOI: 10.1371/journal.pcbi.1002147;

Wall DP, Kudtarkar P, Fusaro VA, Pivovarov R, Patil P, Tonellato PJ. Cloud computing for comparative genomics. BMC Bioinformatics. 2010 May 18; 11:259. PMID: 20482786; PMCID: PMC3098063; DOI: 10.1186/1471-2105-11-259;

This graph shows the total number of publications by year, by first, middle/unknown, or last author.

Bar chart showing 30 publications over 13 distinct years, with a maximum of 5 publications in 2021

Bar chart showing 30 publications over 13 distinct years, with a maximum of 5 publications in 2021

Year	Publications
2010	1
2011	1
2012	2
2014	1
2015	2
2016	2
2018	1
2019	2
2020	2
2021	5
2022	4
2023	4
2024	3

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617.358.2518

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