Kayhan Batmanghelich | Profiles RNS

Kayhan Batmanghelich, PhD

Assistant Professor

Boston University Chobanian & Avedisian School of Medicine

Medicine

Computational Biomedicine

PhD, University of Pennsylvania
MSc, University of Tehran
BSc, Amirkabir University of Technology

BU Research
NIH RePORTER Research

CAREER: Making Domain-Specific AI Models Steerable by Leveraging Foundational Models
09/01/2025 - 08/31/2030 (PI)
National Science Foundation
IIS-2443167

Integrating Multi-Modal Data and Biomechanics in COPD: Toward Robust and Interpretable Biomarkers for Disease Subtyping and Progression
05/15/2025 - 02/28/2030 (PI)
NIH/National Heart, Lung, and Blood Institute
2R01HL141813-07

An Integrative Radiogenomic Approach to Design Genetically-Informed Image Biomarker for Characterizing COPD
06/21/2023 - 04/30/2025 (PI)
NIH/National Heart, Lung, and Blood Institute
7R01HL141813-06

Title

Yr	Title	Project-Sub Proj	Pubs
2025	Integrating Multi-Modal Data and Biomechanics in COPD: Toward Robust and Interpretable Biomarkers for Disease Subtyping and Progression	2R01HL141813-07
2022	An Integrative Radiogenomic Approach to Design Genetically-Informed Image Biomarker for Characterizing COPD	5R01HL141813-05
2022	An Integrative Radiogenomic Approach to Design Genetically-Informed Image Biomarker for Characterizing COPD	7R01HL141813-06
2021	An Integrative Radiogenomic Approach to Design Genetically-Informed Image Biomarker for Characterizing COPD	5R01HL141813-04	2
2020	An Integrative Radiogenomic Approach to Design Genetically-Informed Image Biomarker for Characterizing COPD	5R01HL141813-03	2
2019	An Integrative Radiogenomic Approach to Design Genetically-Informed Image Biomarker for Characterizing COPD	5R01HL141813-02	2
2018	An Integrative Radiogenomic Approach to Design Genetically-Informed Image Biomarker for Characterizing COPD	1R01HL141813-01	2

Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.

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Chang HC, Fang Y, Gorczyca MT, Batmanghelich K, Tseng GC. High-dimensional causal mediation analysis by partial sum statistic and sample splitting strategy in imaging genetics application. Bioinformatics. 2025 Oct 02; 41(10). PMID: 40929087; PMCID: PMC12502916; DOI: 10.1093/bioinformatics/btaf493;

Taseh A, Sasanfar S, Chan M, Sirls E, Nazarian A, Batmanghelich K, Bean JF, Ashkani-Esfahani S. Performance of Natural Language Processing versus International Classification of Diseases Codes in Building Registries for Patients With Fall Injury: Retrospective Analysis. JMIR Med Inform. 2025 Jul 14; 13:e66973. PMID: 40658984; PMCID: PMC12279314; DOI: 10.2196/66973;

Xu Y, Sun L, Peng W, Jia S, Morrison K, Perer A, Zandifar A, Visweswaran S, Eslami M, Batmanghelich K. MedSyn: Text-Guided Anatomy-Aware Synthesis of High-Fidelity 3-D CT Images. IEEE Trans Med Imaging. 2024 Oct; 43(10):3648-3660. PMID: 38900619; PMCID: PMC11656526; DOI: 10.1109/TMI.2024.3415032;

Yu K, Ghosh S, Liu Z, Deible C, Poynton CB, Batmanghelich K. Anatomy-specific Progression Classification in Chest Radiographs via Weakly Supervised Learning. Radiol Artif Intell. 2024 Sep; 6(5):e230277.View Related Profiles.

Poynton, Clare
Batmanghelich, Kayhan

PMID: 39046325; PMCID: PMC11427915; DOI: 10.1148/ryai.230277;

Mina AI, Espino JU, Bradley AM, Thirumala PD, Batmanghelich K, Visweswaran S. Detecting Cerebral Ischemia From Electroencephalography During Carotid Endarterectomy Using Machine Learning. AMIA Jt Summits Transl Sci Proc. 2024; 2024:613-622. PMID: 38827046; PMCID: PMC11141851

Xu Y, Gong M, Xie S, Wei W, Grundmann M, Batmanghelich K, Hou T. Semi-Implicit Denoising Diffusion Models (SIDDMs). Adv Neural Inf Process Syst. 2023 Dec; 36:17383-17394. PMID: 39130612; PMCID: PMC11315220

Mina AI, Espino JU, Bradley AM, Thirumala P, Batmanghelich K, Visweswaran S. Time-Series Aware Metrics for the Evaluation of Intraoperative Electroencephalography-Based Ischemia Detection. Stud Health Technol Inform. 2024 Jan 25; 310:274-278. PMID: 38269808

Yu K, Sun L, Chen J, Reynolds M, Chaudhary T, Batmanghelich K. DrasCLR: A self-supervised framework of learning disease-related and anatomy-specific representation for 3D lung CT images. Med Image Anal. 2024 Feb; 92:103062. PMID: 38086236; PMCID: PMC10872608; DOI: 10.1016/j.media.2023.103062;

Chen J, Xu Z, Sun L, Yu K, Hersh CP, Boueiz A, Hokanson JE, Sciurba FC, Silverman EK, Castaldi PJ, Batmanghelich K. Deep Learning Integration of Chest Computed Tomography Imaging and Gene Expression Identifies Novel Aspects of COPD. Chronic Obstr Pulm Dis. 2023 Oct 26; 10(4):355-368. PMID: 37413999; PMCID: PMC10699487; DOI: 10.15326/jcopdf.2023.0399;

Ghosh S, Yu K, Batmanghelich K. Distilling BlackBox to Interpretable Models for Efficient Transfer Learning. Med Image Comput Comput Assist Interv. 2023 Oct; 14221:628-638. PMID: 38827244; PMCID: PMC11141113; DOI: 10.1007/978-3-031-43895-0_59;

Showing 10 of 49 results. Show More

Ragoza M, Batmanghelich K. Physics-Informed Neural Networks for Tissue Elasticity Reconstruction in Magnetic Resonance Elastography. Med Image Comput Comput Assist Interv. 2023 Oct; 14229:333-343. PMID: 38827227; PMCID: PMC11141115; DOI: 10.1007/978-3-031-43999-5_32;

Murali N, Puli A, Yu K, Ranganath R, Batmanghelich K. Beyond Distribution Shift: Spurious Features Through the Lens of Training Dynamics. Transact Mach Learn Res. 2023 Oct; 2023. PMID: 38645403; PMCID: PMC11029547

Reynolds M, Chaudhary T, Eshaghzadeh Torbati M, Tudorascu DL, Batmanghelich K. ComBat Harmonization: Empirical Bayes versus fully Bayes approaches. Neuroimage Clin. 2023; 39:103472. PMID: 37506457; PMCID: PMC10412957; DOI: 10.1016/j.nicl.2023.103472;

Ghosh S, Yu K, Arabshahi F, Batmanghelich K. Dividing and Conquering a BlackBox to a Mixture of Interpretable Models: Route, Interpret, Repeat. Proc Int Conf Mach Learn. 2023 Jul; 202:11360-11397. PMID: 37711878; PMCID: PMC10500943

Singla S, Murali N, Arabshahi F, Triantafyllou S, Batmanghelich K. Augmentation by Counterfactual Explanation - Fixing an Overconfident Classifier. IEEE Winter Conf Appl Comput Vis. 2023 Jan; 2023:4709-4719. PMID: 37724183; PMCID: PMC10506513; DOI: 10.1109/wacv56688.2023.00470;

Singla S, Eslami M, Pollack B, Wallace S, Batmanghelich K. Explaining the black-box smoothly-A counterfactual approach. Med Image Anal. 2023 Feb; 84:102721. PMID: 36571975; PMCID: PMC9835100; DOI: 10.1016/j.media.2022.102721;

Dorent R, Kujawa A, Ivory M, Bakas S, Rieke N, Joutard S, Glocker B, Cardoso J, Modat M, Batmanghelich K, Belkov A, Calisto MB, Choi JW, Dawant BM, Dong H, Escalera S, Fan Y, Hansen L, Heinrich MP, Joshi S, Kashtanova V, Kim HG, Kondo S, Kruse CN, Lai-Yuen SK, Li H, Liu H, Ly B, Oguz I, Shin H, Shirokikh B, Su Z, Wang G, Wu J, Xu Y, Yao K, Zhang L, Ourselin S, Shapey J, Vercauteren T. CrossMoDA 2021 challenge: Benchmark of cross-modality domain adaptation techniques for vestibular schwannoma and cochlea segmentation. Med Image Anal. 2023 Jan; 83:102628. PMID: 36283200; PMCID: PMC10186181; DOI: 10.1016/j.media.2022.102628;

Liu Y, Bilodeau E, Pollack B, Batmanghelich K. Automated detection of premalignant oral lesions on whole slide images using convolutional neural networks. Oral Oncol. 2022 Nov; 134:106109. PMID: 36126604

Xu Y, Xie S, Reynolds M, Ragoza M, Gong M, Batmanghelich K. Adversarial Consistency for Single Domain Generalization in Medical Image Segmentation. Med Image Comput Comput Assist Interv. 2022 Sep; 13437:671-681. PMID: 38859913; PMCID: PMC11164048; DOI: 10.1007/978-3-031-16449-1_64;

Yu K, Ghosh S, Liu Z, Deible C, Batmanghelich K. Anatomy-Guided Weakly-Supervised Abnormality Localization in Chest X-rays. Med Image Comput Comput Assist Interv. 2022 Sep; 13435:658-668. PMID: 38952749; PMCID: PMC11215940

Sun L, Chen J, Xu Y, Gong M, Yu K, Batmanghelich K. Hierarchical Amortized GAN for 3D High Resolution Medical Image Synthesis. IEEE J Biomed Health Inform. 2022 Aug; 26(8):3966-3975. PMID: 35522642; PMCID: PMC9413516; DOI: 10.1109/JBHI.2022.3172976;

Saeedi A, Utsumi Y, Sun L, Batmanghelich K, Lehman LH. Knowledge Distillation via Constrained Variational Inference. Proc AAAI Conf Artif Intell. 2022; 36(7):8132-8140. PMID: 36092768; PMCID: PMC9455583; DOI: 10.1609/aaai.v36i7.20786;

Robinson J, Sun L, Yu K, Batmanghelich K, Jegelka S, Sra S. Can contrastive learning avoid shortcut solutions? Adv Neural Inf Process Syst. 2021 Dec; 34:4974-4986. PMID: 35546903; PMCID: PMC9089441

Chen J, Sun L, Yu K, Batmanghelich K. Extracting Disease-Relevant Features with Adversarial Regularization. Proceedings (IEEE Int Conf Bioinformatics Biomed). 2021 Dec; 2021:3464-3471. PMID: 35198261; PMCID: PMC8863436; DOI: 10.1109/bibm52615.2021.9669878;

Pollack BL, Batmanghelich K, Cai SS, Gordon E, Wallace S, Catania R, Morillo-Hernandez C, Furlan A, Borhani AA. Deep Learning Prediction of Voxel-Level Liver Stiffness in Patients with Nonalcoholic Fatty Liver Disease. Radiol Artif Intell. 2021 Nov; 3(6):e200274. PMID: 34870213; PMCID: PMC8637225; DOI: 10.1148/ryai.2021200274;

Singla S, Wallace S, Triantafillou S, Batmanghelich K. Using Causal Analysis for Conceptual Deep Learning Explanation. Med Image Comput Comput Assist Interv. 2021; 12903:519-528. PMID: 34766174; PMCID: PMC8579822; DOI: 10.1007/978-3-030-87199-4_49;

Jena R, Singla S, Batmanghelich K. Self-Supervised Vessel Enhancement Using Flow-Based Consistencies. Med Image Comput Comput Assist Interv. 2021; 12902:242-251. PMID: 34766173; PMCID: PMC8579828; DOI: 10.1007/978-3-030-87196-3_23;

Gong M, Liu P, Sciurba FC, Stojanov P, Tao D, Tseng GC, Zhang K, Batmanghelich K. Unpaired data empowers association tests. Bioinformatics. 2021 May 05; 37(6):785-792. PMID: 33070196; PMCID: PMC8098021; DOI: 10.1093/bioinformatics/btaa886;

Sun L, Yu K, Batmanghelich K. Context Matters: Graph-based Self-supervised Representation Learning for Medical Images. Proc AAAI Conf Artif Intell. 2021 Feb; 35(6):4874-4882. PMID: 34650825; PMCID: PMC8513790

Singla S, Gong M, Riley C, Sciurba F, Batmanghelich K. Improving clinical disease subtyping and future events prediction through a chest CT-based deep learning approach. Med Phys. 2021 Mar; 48(3):1168-1181. PMID: 33340116; PMCID: PMC7965349; DOI: 10.1002/mp.14673;

Saeedi A, Yadollahpour P, Singla S, Pollack B, Wells W, Sciurba F, Batmanghelich K. Incorporating External Information in Tissue Subtyping: A Topic Modeling Approach. Proc Mach Learn Res. 2021; 149:478-505. PMID: 35098143; PMCID: PMC8797254

Yu K, Visweswaran S, Batmanghelich K. Semi-supervised Hierarchical Drug Embedding in Hyperbolic Space. J Chem Inf Model. 2020 Dec 28; 60(12):5647-5657. PMID: 33140969; PMCID: PMC7943198; DOI: 10.1021/acs.jcim.0c00681;

Yu X, Liu T, Gong M, Zhang K, Batmanghelich K, Tao D. Label-Noise Robust Domain Adaptation. Proc Mach Learn Res. 2020 Jul; 119:10913-10924. PMID: 33855300; PMCID: PMC8043624

Ravanbakhsh M, Tschernezki V, Last F, Klein T, Batmanghelich K, Tresp V, Nabi M. HUMAN-MACHINE COLLABORATION FOR MEDICAL IMAGE SEGMENTATION. Proc IEEE Int Conf Acoust Speech Signal Process. 2020 May; 2020:1040-1044. PMID: 33041676; PMCID: PMC7543994; DOI: 10.1109/ICASSP40776.2020.9053555;

Xu Y, Gong M, Chen J, Chen Z, Batmanghelich K. 3D-BoxSup: Positive-Unlabeled Learning of Brain Tumor Segmentation Networks From 3D Bounding Boxes. Front Neurosci. 2020; 14:350. PMID: 32410939; PMCID: PMC7199456; DOI: 10.3389/fnins.2020.00350;

Xu Y, Gong M, Chen J, Liu T, Zhang K, Batmanghelich K. Generative-Discriminative Complementary Learning. Proc AAAI Conf Artif Intell. 2020 Feb; 34(4):6526-6533. PMID: 32944410; PMCID: PMC7494202; DOI: 10.1609/aaai.v34i04.6126;

Chen J, Batmanghelich K. Weakly Supervised Disentanglement by Pairwise Similarities. Proc AAAI Conf Artif Intell. 2020 Feb; 34(4):3495-3502. PMID: 32944409; PMCID: PMC7494201; DOI: 10.1609/aaai.v34i04.5754;

Fu H, Gong M, Wang C, Batmanghelich K, Zhang K, Tao D. Geometry-Consistent Generative Adversarial Networks for One-Sided Unsupervised Domain Mapping. Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit. 2019 Jun; 2019:2422-2431. PMID: 32076365; PMCID: PMC7030214; DOI: 10.1109/cvpr.2019.00253;

Gong M, Xu Y, Li C, Zhang K, Batmanghelich K. Twin Auxiliary Classifiers GAN. Adv Neural Inf Process Syst. 2019 Dec; 32:1328-1337. PMID: 32103879; PMCID: PMC7042662

Fu H, Gong M, Wang C, Batmanghelich K, Tao D. Deep Ordinal Regression Network for Monocular Depth Estimation. Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit. 2018 Jun; 2018:2002-2011. PMID: 31274971

Yu X, Liu T, Gong M, Batmanghelich K, Tao D. An Efficient and Provable Approach for Mixture Proportion Estimation Using Linear Independence Assumption. Conf Comput Vis Pattern Recognit Workshops. 2018 Jun; 2018:4480-4489. PMID: 32089968

Singla S, Gong M, Ravanbakhsh S, Sciurba F, Poczos B, Batmanghelich KN. Subject2Vec: Generative-Discriminative Approach from a Set of Image Patches to a Vector. Med Image Comput Comput Assist Interv. 2018 Sep; 11070:502-510. PMID: 30895278

Schabdach J, Wells WM, Cho M, Batmanghelich KN. A Likelihood-Free Approach for Characterizing Heterogeneous Diseases in Large-Scale Studies. Inf Process Med Imaging. 2017 Jun; 10265:170-183. PMID: 29129964

Freifeld O, Hauberg S, Batmanghelich K, Fisher JW. Transformations Based on Continuous Piecewise-Affine Velocity Fields. IEEE Trans Pattern Anal Mach Intell. 2017 Dec; 39(12):2496-2509. PMID: 28092517

Batmanghelich K, Saeedi A, Narasimhan K, Gershman S. Nonparametric Spherical Topic Modeling with Word Embeddings. Proc Conf Assoc Comput Linguist Meet. 2016 Aug; 2016:537-542. PMID: 30636838

Batmanghelich KN, Cho M, Jose RS, Golland P. Spherical Topic Models for Imaging Phenotype Discovery in Genetic Studies. Bayesian Graph Models Biomed Imaging (2014). 2014; 8677:107-117. PMID: 25717477

Ghanbari Y, Bloy L, Batmanghelich K, Roberts TP, Verma R. Dominant component analysis of electrophysiological connectivity networks. Med Image Comput Comput Assist Interv. 2012; 15(Pt 3):231-8. PMID: 23286135

Batmanghelich KN, Ye DH, Pohl KM, Taskar B, Davatzikos C. DISEASE CLASSIFICATION AND PREDICTION VIA SEMI-SUPERVISED DIMENSIONALITY REDUCTION. Proc IEEE Int Symp Biomed Imaging. 2011; 2011:1086-1090. PMID: 28603581

Davatzikos C, Bhatt P, Shaw LM, Batmanghelich KN, Trojanowski JQ. Prediction of MCI to AD conversion, via MRI, CSF biomarkers, and pattern classification. Neurobiol Aging. 2011 Dec; 32(12):2322.e19-27. PMID: 20594615

This graph shows the total number of publications by year, by first, middle/unknown, or last author.

Bar chart showing 49 publications over 14 distinct years, with a maximum of 9 publications in 2021

Bar chart showing 49 publications over 14 distinct years, with a maximum of 9 publications in 2021

Year	Publications
2010	1
2011	1
2012	1
2014	1
2016	1
2017	2
2018	3
2019	1
2020	7
2021	9
2022	7
2023	8
2024	5
2025	2

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Poynton, Clare

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