Jonathan Song

MD Student

Boston University Chobanian & Avedisian School of Medicine

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Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.

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Poska JM, Wormsbaecher C, Cumbia BM, Price MR, Cortes-Medina M, Holter J, Agarwal S, Mo XM, Song JW, Burd CJ. In utero exposure to estrogenic bisphenol analogues increases mammary tissue stiffness. Reprod Toxicol. 2025 Sep; 136:108974. PMID: 40513842

Agarwal SS, Holter JC, Jones TH, Fuller BT, Tinapple JW, Barlage JM, Song JW. A Modular, Cost-Effective, and Pumpless Perfusion Assembly for the Long-Term Culture of Engineered Microvessels. Micromachines (Basel). 2025 Mar 19; 16(3). PMID: 40141962; PMCID: PMC11945127; DOI: 10.3390/mi16030351;

Xia H, Hoang MH, Schmidt E, Kiwala S, McMichael J, Skidmore ZL, Fisk B, Song JJ, Hundal J, Mooney T, Walker JR, Goedegebuure SP, Miller CA, Gillanders WE, Griffith OL, Griffith M. pVACview: an interactive visualization tool for efficient neoantigen prioritization and selection. Genome Med. 2024 Nov 14; 16(1):132. PMID: 39538339; PMCID: PMC11562694; DOI: 10.1186/s13073-024-01384-7;

Agarwal SS, Cortes-Medina M, Holter JC, Avendano A, Tinapple JW, Barlage JM, Menyhert MM, Onua LM, Song JW. Rapid low-cost assembly of modular microvessel-on-a-chip with benchtop xurography. Lab Chip. 2024 Oct 22; 24(21):5065-5076. PMID: 39397763; PMCID: PMC11472271; DOI: 10.1039/d4lc00565a;

Xia H, Hoang M, Schmidt E, Kiwala S, McMichael J, Skidmore ZL, Fisk B, Song JJ, Hundal J, Mooney T, Walker JR, Peter Goedegebuure S, Miller CA, Gillanders WE, Griffith OL, Griffith M. pVACview: an interactive visualization tool for efficient neoantigen prioritization and selection. ArXiv. 2024 Jun 11. PMID: 38947921; PMCID: PMC11213132

Cortes-Medina M, Bushman AR, Beshay PE, Adorno JJ, Menyhert MM, Hildebrand RM, Agarwal SS, Avendano A, Friedman AK, Song JW. Chondroitin sulfate, dermatan sulfate, and hyaluronic acid differentially modify the biophysical properties of collagen-based hydrogels. Acta Biomater. 2024 Jan 15; 174:116-126. PMID: 38101556; PMCID: PMC10842894; DOI: 10.1016/j.actbio.2023.12.018;

Cortes-Medina M, Bushman AR, Beshay PE, Adorno JJ, Menyhert MM, Hildebrand RM, Agarwal SS, Avendano A, Song JW. Chondroitin sulfate, dermatan sulfate, and hyaluronic acid differentially modify the biophysical properties of collagen-based hydrogels. bioRxiv. 2023 May 23. PMID: 37293049; PMCID: PMC10245839; DOI: 10.1101/2023.05.22.541626;

Chang CW, Shih HC, Cortes-Medina MG, Beshay PE, Avendano A, Seibel AJ, Liao WH, Tung YC, Song JW. Extracellular Matrix-Derived Biophysical Cues Mediate Interstitial Flow-Induced Sprouting Angiogenesis. ACS Appl Mater Interfaces. 2023 Mar 29; 15(12):15047-15058. PMID: 36916875; PMCID: PMC11078157; DOI: 10.1021/acsami.2c15180;

Mammoto A, Mammoto T, Song JW. Editorial: Organ microenvironment in vascular formation, homeostasis and engineering. Front Bioeng Biotechnol. 2022; 10:1130851. PMID: 36704295

Shahhosseini M, Beshay PE, Akbari E, Roki N, Lucas CR, Avendano A, Song JW, Castro CE. Multiplexed Detection of Molecular Interactions with DNA Origami Engineered Cells in 3D Collagen Matrices. ACS Appl Mater Interfaces. 2022 Dec 21; 14(50):55307-55319. PMID: 36509424

Showing 10 of 37 results. Show More

Akbari E, Shahhosseini M, Robbins A, Poirier MG, Song JW, Castro CE. Low cost and massively parallel force spectroscopy with fluid loading on a chip. Nat Commun. 2022 Nov 10; 13(1):6800. PMID: 36357383

Holter JC, Chang CW, Avendano A, Garg AA, Verma AK, Charan M, Ahirwar DK, Ganju RK, Song JW. Fibroblast-derived CXCL12 increases vascular permeability in a 3-D microfluidic model independent of extracellular matrix contractility. Front Bioeng Biotechnol. 2022; 10:888431. PMID: 36118583

Fuller BT, Buczynksi EM, Beshay PE, Song JW. Molecular sensors for detection of tumor-stroma crosstalk. Adv Cancer Res. 2022; 154:47-91. PMID: 35459472

Jones TH, Song JW, Abushahin L. Tumor treating fields: An emerging treatment modality for thoracic and abdominal cavity cancers. Transl Oncol. 2022 Jan; 15(1):101296. PMID: 34847422

Beshay PE, Cortes-Medina MG, Menyhert MM, Song JW. The biophysics of cancer: emerging insights from micro- and nanoscale tools. Adv Nanobiomed Res. 2022 Jan; 2(1). PMID: 35156093

Akbari E, Spychalski GB, Menyhert MM, Rangharajan KK, Tinapple JW, Prakash S, Song JW. Endothelial barrier function is co-regulated at vessel bifurcations by fluid forces and sphingosine-1-phosphate. Biomater Biosyst. 2021 Sep; 3. PMID: 35317095

Jones TH, Kaul K, Garg AA, Song JW, Ganju RK, Subramaniam VV. Directional Migration of Breast Cancer Cells Hindered by Induced Electric Fields May Be Due to Accompanying Alteration of Metabolic Activity. Bioelectricity. 2021 Mar 01; 3(1):92-100. PMID: 34476380

Freshour SL, Kiwala S, Cotto KC, Coffman AC, McMichael JF, Song JJ, Griffith M, Griffith OL, Wagner AH. Integration of the Drug-Gene Interaction Database (DGIdb 4.0) with open crowdsource efforts. Nucleic Acids Res. 2021 Jan 08; 49(D1):D1144-D1151. PMID: 33237278; PMCID: PMC7778926; DOI: 10.1093/nar/gkaa1084;

Hussain S, Peng B, Cherian M, Song JW, Ahirwar DK, Ganju RK. The Roles of Stroma-Derived Chemokine in Different Stages of Cancer Metastases. Front Immunol. 2020; 11:598532. PMID: 33414786

Moses SR, Adorno JJ, Palmer AF, Song JW. Vessel-on-a-chip models for studying microvascular physiology, transport, and function in vitro. Am J Physiol Cell Physiol. 2021 Jan 01; 320(1):C92-C105. PMID: 33176110

Wormsbaecher C, Hindman AR, Avendano A, Cortes-Medina M, Jones CE, Bushman A, Onua L, Kovalchin CE, Murphy AR, Helber HL, Shapiro A, Voytovitch K, Kuang X, Aguilar-Valenzuela R, Leight JL, Song JW, Burd CJ. In utero estrogenic endocrine disruption alters the stroma to increase extracellular matrix density and mammary gland stiffness. Breast Cancer Res. 2020 May 05; 22(1):41. PMID: 32370801

Avendano A, Chang JJ, Cortes-Medina MG, Seibel AJ, Admasu BR, Boutelle CM, Bushman AR, Garg AA, DeShetler CM, Cole SL, Song JW. Integrated Biophysical Characterization of Fibrillar Collagen-Based Hydrogels. ACS Biomater Sci Eng. 2020 Mar 09; 6(3):1408-1417. PMID: 32292818

Chang CW, Seibel AJ, Avendano A, Cortes-Medina MG, Song JW. Distinguishing Specific CXCL12 Isoforms on Their Angiogenesis and Vascular Permeability Promoting Properties. Adv Healthc Mater. 2020 Feb; 9(4):e1901399. PMID: 31944591

Garg AA, Jones TH, Moss SM, Mishra S, Kaul K, Ahirwar DK, Ferree J, Kumar P, Subramaniam D, Ganju RK, Subramaniam VV, Song JW. Electromagnetic fields alter the motility of metastatic breast cancer cells. Commun Biol. 2019; 2:303. PMID: 31428691

Akbari E, Spychalski GB, Rangharajan KK, Prakash S, Song JW. Competing Fluid Forces Control Endothelial Sprouting in a 3-D Microfluidic Vessel Bifurcation Model. Micromachines (Basel). 2019 Jul 04; 10(7). PMID: 31277456

Chang CW, Seibel AJ, Song JW. Application of microscale culture technologies for studying lymphatic vessel biology. Microcirculation. 2019 Nov; 26(8):e12547. PMID: 30946511

Avendano A, Cortes-Medina M, Song JW. Application of 3-D Microfluidic Models for Studying Mass Transport Properties of the Tumor Interstitial Matrix. Front Bioeng Biotechnol. 2019; 7:6. PMID: 30761297

Pitarresi JR, Liu X, Avendano A, Thies KA, Sizemore GM, Hammer AM, Hildreth BE, Wang DJ, Steck SA, Donohue S, Cuitiño MC, Kladney RD, Mace TA, Chang JJ, Ennis CS, Li H, Reeves RH, Blackshaw S, Zhang J, Yu L, Fernandez SA, Frankel WL, Bloomston M, Rosol TJ, Lesinski GB, Konieczny SF, Guttridge DC, Rustgi AK, Leone G, Song JW, Wu J, Ostrowski MC. Disruption of stromal hedgehog signaling initiates RNF5-mediated proteasomal degradation of PTEN and accelerates pancreatic tumor growth. Life Sci Alliance. 2018 Oct; 1(5):e201800190. PMID: 30456390

Nowak-Sliwinska P, Alitalo K, Allen E, Anisimov A, Aplin AC, Auerbach R, Augustin HG, Bates DO, van Beijnum JR, Bender RHF, Bergers G, Bikfalvi A, Bischoff J, Böck BC, Brooks PC, Bussolino F, Cakir B, Carmeliet P, Castranova D, Cimpean AM, Cleaver O, Coukos G, Davis GE, De Palma M, Dimberg A, Dings RPM, Djonov V, Dudley AC, Dufton NP, Fendt SM, Ferrara N, Fruttiger M, Fukumura D, Ghesquière B, Gong Y, Griffin RJ, Harris AL, Hughes CCW, Hultgren NW, Iruela-Arispe ML, Irving M, Jain RK, Kalluri R, Kalucka J, Kerbel RS, Kitajewski J, Klaassen I, Kleinmann HK, Koolwijk P, Kuczynski E, Kwak BR, Marien K, Melero-Martin JM, Munn LL, Nicosia RF, Noel A, Nurro J, Olsson AK, Petrova TV, Pietras K, Pili R, Pollard JW, Post MJ, Quax PHA, Rabinovich GA, Raica M, Randi AM, Ribatti D, Ruegg C, Schlingemann RO, Schulte-Merker S, Smith LEH, Song JW, Stacker SA, Stalin J, Stratman AN, Van de Velde M, van Hinsbergh VWM, Vermeulen PB, Waltenberger J, Weinstein BM, Xin H, Yetkin-Arik B, Yla-Herttuala S, Yoder MC, Griffioen AW. Consensus guidelines for the use and interpretation of angiogenesis assays. Angiogenesis. 2018 08; 21(3):425-532. PMID: 29766399; PMCID: PMC6237663; DOI: 10.1007/s10456-018-9613-x;

LaPak KM, Vroom DC, Garg AA, Guan X, Hays JL, Song JW, Burd CE. Melanoma-associated mutants within the serine-rich domain of PAK5 direct kinase activity to mitogenic pathways. Oncotarget. 2018 May 22; 9(39):25386-25401. PMID: 29875996

Walker CJ, Rush CM, Dama P, O'Hern MJ, Cosgrove CM, Gillespie JL, Zingarelli RA, Smith B, Stein ME, Mutch DG, Shakya R, Chang CW, Selvendiran K, Song JW, Cohn DE, Goodfellow PJ. MAX Mutations in Endometrial Cancer: Clinicopathologic Associations and Recurrent MAX p.His28Arg Functional Characterization. J Natl Cancer Inst. 2018 May 01; 110(5):517-526. PMID: 29155953

Akbari E, Spychalski GB, Rangharajan KK, Prakash S, Song JW. Flow dynamics control endothelial permeability in a microfluidic vessel bifurcation model. Lab Chip. 2018 Mar 27; 18(7):1084-1093. PMID: 29488533

Akbari E, Mollica MY, Lucas CR, Bushman SM, Patton RA, Shahhosseini M, Song JW, Castro CE. Engineering Cell Surface Function with DNA Origami. Adv Mater. 2017 Dec; 29(46). PMID: 29027713

Akbari E, Spychalski GB, Song JW. Microfluidic approaches to the study of angiogenesis and the microcirculation. Microcirculation. 2017 Jul; 24(5). PMID: 28182312

Hammer AM, Sizemore GM, Shukla VC, Avendano A, Sizemore ST, Chang JJ, Kladney RD, Cuitiño MC, Thies KA, Verfurth Q, Chakravarti A, Yee LD, Leone G, Song JW, Ghadiali SN, Ostrowski MC. Stromal PDGFR-a Activation Enhances Matrix Stiffness, Impedes Mammary Ductal Development, and Accelerates Tumor Growth. Neoplasia. 2017 Jun; 19(6):496-508. PMID: 28501760

Bazou D, Ng MR, Song JW, Chin SM, Maimon N, Munn LL. Flow-induced HDAC1 phosphorylation and nuclear export in angiogenic sprouting. Sci Rep. 2016 Sep 27; 6:34046. PMID: 27669993

Qazi H, Shi ZD, Song JW, Cancel LM, Huang P, Zeng Y, Roberge S, Munn LL, Tarbell JM. Heparan sulfate proteoglycans mediate renal carcinoma metastasis. Int J Cancer. 2016 Dec 15; 139(12):2791-2801. PMID: 27543953

This graph shows the total number of publications by year, by first, middle/unknown, or last author.

Bar chart showing 37 publications over 10 distinct years, with a maximum of 5 publications in 2018 and 2020 and 2021

Bar chart showing 37 publications over 10 distinct years, with a maximum of 5 publications in 2018 and 2020 and 2021

Year	Publications
2016	2
2017	3
2018	5
2019	4
2020	5
2021	5
2022	4
2023	4
2024	3
2025	2

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