Publications listed below are automatically derived from MEDLINE/PubMed and other
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Cox RS, Madsen C, McLaughlin J, Nguyen T, Roehner N, Bartley B, Bhatia S, Bissell M, Clancy K, Gorochowski T, Grünberg R, Luna A, Le Novère N, Pocock M, Sauro H, Sexton JT, Stan GB, Tabor JJ, Voigt CA, Zundel Z, Myers C, Beal J, Wipat A. Synthetic Biology Open Language Visual (SBOL Visual) Version 2.0. J Integr Bioinform. 2018 Mar 19; 15(1). PMID: 29549707
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Bhatia SP, Smanski MJ, Voigt CA, Densmore DM. Genetic Design via Combinatorial Constraint Specification. ACS Synth Biol. 2017 Nov 17; 6(11):2130-2135. PMID: 28874044
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Weinberg BH, Pham NTH, Caraballo LD, Lozanoski T, Engel A, Bhatia S, Wong WW. Large-scale design of robust genetic circuits with multiple inputs and outputs for mammalian cells. Nat Biotechnol. 2017 May; 35(5):453-462.View Related Profiles. PMID: 28346402
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Bhatia S, LaBoda C, Yanez V, Haddock-Angelli T, Densmore D. Permutation Machines. ACS Synth Biol. 2016 08 19; 5(8):827-34. PMID: 27383067
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Silva R, Bhatia S, Densmore D. A reconfigurable continuous-flow fluidic routing fabric using a modular, scalable primitive. Lab Chip. 2016 07 05; 16(14):2730-41. PMID: 27345339
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Quintin M, Ma NJ, Ahmed S, Bhatia S, Lewis A, Isaacs FJ, Densmore D. Merlin: Computer-Aided Oligonucleotide Design for Large Scale Genome Engineering with MAGE. ACS Synth Biol. 2016 Jun 17; 5(6):452-8. PMID: 27054880
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Quinn JY, Cox RS, Adler A, Beal J, Bhatia S, Cai Y, Chen J, Clancy K, Galdzicki M, Hillson NJ, Le Novère N, Maheshwari AJ, McLaughlin JA, Myers CJ, P U, Pocock M, Rodriguez C, Soldatova L, Stan GB, Swainston N, Wipat A, Sauro HM. SBOL Visual: A Graphical Language for Genetic Designs. PLoS Biol. 2015 Dec; 13(12):e1002310. PMID: 26633141; PMCID: PMC4669170
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Smanski MJ, Bhatia S, Zhao D, Park Y, B A Woodruff L, Giannoukos G, Ciulla D, Busby M, Calderon J, Nicol R, Gordon DB, Densmore D, Voigt CA. Functional optimization of gene clusters by combinatorial design and assembly. Nat Biotechnol. 2014 Dec; 32(12):1241-9. PMID: 25419741
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Densmore DM, Bhatia S. Bio-design automation: software + biology + robots. Trends Biotechnol. 2014 Mar; 32(3):111-3. PMID: 24269087
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Bhatia S, Densmore D. Pigeon: a design visualizer for synthetic biology. ACS Synth Biol. 2013 Jun 21; 2(6):348-50. PMID: 23654259
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Yaman F, Bhatia S, Adler A, Densmore D, Beal J. Automated selection of synthetic biology parts for genetic regulatory networks. ACS Synth Biol. 2012 Aug 17; 1(8):332-44. PMID: 23651287
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Beal J, Weiss R, Densmore D, Adler A, Appleton E, Babb J, Bhatia S, Davidsohn N, Haddock T, Loyall J, Schantz R, Vasilev V, Yaman F. An end-to-end workflow for engineering of biological networks from high-level specifications. ACS Synth Biol. 2012 Aug 17; 1(8):317-31. PMID: 23651286
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Xia B, Bhatia S, Bubenheim B, Dadgar M, Densmore D, Anderson JC. Developer's and user's guide to Clotho v2.0 A software platform for the creation of synthetic biological systems. Methods Enzymol. 2011; 498:97-135. PMID: 21601675
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