Matthew R. Jones, PhD
Associate Professor
Boston University Chobanian & Avedisian School of Medicine
Medicine
Pulmonary, Allergy, Sleep & Critical Care Medicine

PhD, Boston University School of Medicine
BA, University of Delaware



I have expertise in innate immunology, pulmonary epithelial and lymphatic biology and post-transcriptional mechanisms of gene expression.

Diversity, Equity, Inclusion and Accessibility

Whether in the lab or in the classroom, I am fully committed to fostering and enhancing a training environment here at BUSM that prioritizes diversity, equity, inclusion and accessibility. Diverse groups have been shown to be more productive, more innovative and engage with greater levels of critical reasoning; all of which are critical for thriving biomedical research and educational programs. Towards this goal, I have served to increase diversity at all levels of trainees; from postbac, graduate and medical students to faculty recruitment. I have participated in the Postbaccalaureate Research Education Programs (PREP) by helping to prepare students for graduate school interviews. This program helps develop research experiences for students from under-represented groups that strive for a career in research or medicine. In my role in medical school admissions, we embrace a holistic review of applicants that acknowledges strength of character, distance traveled, grit and perseverance. For graduate school admissions and as Director of the Graduate Program in Molecular and Translational Medicine, I serve to enhance the recruitment of under-represented groups through creation of mechanisms such as the Emerging Scholar’s Award which is now supported by multiple Departments throughout the Medical School. The goal of this award is to mitigate expensive relocation to the Boston area. With my involvement with the TL1 Regenerative Medicine Training Program we have enhanced a strong track record of supporting the recruitment and enrollment of under-represented trainees. As participating faculty in the Pulmonary Center, I serve as a member of the DEIA faculty recruitment committee. In all aspects of my professional and personal life, I am firmly dedicated to diversity, equity, inclusion and accessibility efforts and I actively and reflectively endeavor to continuously improve upon them.

Member
Boston University
Pulmonary Center


Member
Boston University
Evans Center for Interdisciplinary Biomedical Research


Member
Boston University
Genome Science Institute


Graduate Faculty (Primary Mentor of Grad Students)
Boston University Chobanian & Avedisian School of Medicine, Graduate Medical Sciences




Biology of Lymphangiogenesis in the Adult Lung
07/01/2022 - 06/30/2026 (Multi-PI)
PI: Matthew R. Jones, PhD
NIH/National Heart, Lung, and Blood Institute
5R01HL164612-02

Origins and functional roles of Miwi2-positive multiciliated cells during inflammation
03/07/2018 - 02/28/2023 (Multi-PI)
PI: Matthew R. Jones, PhD
NIH/National Heart, Lung, and Blood Institute
5R01HL136725-04

MicroRNA Uridylation by Zcchc11 Regulates Pulmonary Inflammation
07/12/2010 - 05/31/2017 (PI)
NIH/National Heart, Lung, and Blood Institute
5R01HL104053-05

The piRNA binding protein Miwi2 promotes cytokine expression during bacterial pneumonia
09/01/2015 - 06/01/2016 (Key Person / Mentor)
PI: Gregory Wasserman, PhD
NIH/National Heart, Lung, and Blood Institute
1F31HL127978-01



Title


Yr Title Project-Sub Proj Pubs
2023 Biology of Lymphangiogenesis in the Adult Lung 5R01HL164612-02
2022 Biology of Lymphangiogenesis in the Adult Lung 1R01HL164612-01
2021 Origins and functional roles of Miwi2-positive multiciliated cells during inflammation 5R01HL136725-04 3
2020 Origins and functional roles of Miwi2-positive multiciliated cells during inflammation 5R01HL136725-03 3
2019 Origins and functional roles of Miwi2-positive multiciliated cells during inflammation 5R01HL136725-02 3
2018 Origins and functional roles of Miwi2-positive multiciliated cells during inflammation 1R01HL136725-01A1 3
2014 MicroRNA uridylation by Zcchc11 regulates pulmonary inflammation 5R01HL104053-05 18
2013 MicroRNA uridylation by Zcchc11 regulates pulmonary inflammation 5R01HL104053-04 18
2012 MicroRNA uridylation by Zcchc11 regulates pulmonary inflammation 5R01HL104053-03 18
2011 MicroRNA uridylation by Zcchc11 regulates pulmonary inflammation 5R01HL104053-02 18
Showing 10 of 11 results. Show All Results

Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.

iCite Analysis       Copy PMIDs To Clipboard

  1. Arafa EI, Shenoy AT, Barker KA, Etesami NS, Martin IM, Lyon De Ana C, Na E, Odom CV, Goltry WN, Korkmaz FT, Wooten AK, Belkina AC, Guillon A, Forsberg EC, Jones MR, Quinton LJ, Mizgerd JP. Recruitment and training of alveolar macrophages after pneumococcal pneumonia. JCI Insight. 2022 Mar 08; 7(5).View Related Profiles. PMID: 35133985; PMCID: PMC8983128; DOI: 10.1172/jci.insight.150239;
     
  2. Na E, Allen E, Baird LA, Odom CV, Korkmaz FT, Shenoy AT, Matschulat AM, Jones MR, Kotton DN, Mizgerd JP, Varelas X, Traber KE, Quinton LJ. Epithelial LIF signaling limits apoptosis and lung injury during bacterial pneumonia. Am J Physiol Lung Cell Mol Physiol. 2022 Apr 01; 322(4):L550-L563.View Related Profiles. PMID: 35137631; PMCID: PMC8957336; DOI: 10.1152/ajplung.00325.2021;
     
  3. Sanders NL, Martin IMC, Sharma A, Jones MR, Quinton LJ, Bosmann M, Mizgerd JP. Neutrophil Extracellular Traps as an Exacerbating Factor in Bacterial Pneumonia. Infect Immun. 2022 03 17; 90(3):e0049121.View Related Profiles. PMID: 35130455; PMCID: PMC8929384; DOI: 10.1128/iai.00491-21;
     
  4. Shenoy AT, Lyon De Ana C, Arafa EI, Salwig I, Barker KA, Korkmaz FT, Ramanujan A, Etesami NS, Soucy AM, Martin IMC, Tilton BR, Hinds A, Goltry WN, Kathuria H, Braun T, Jones MR, Quinton LJ, Belkina AC, Mizgerd JP. Antigen presentation by lung epithelial cells directs CD4+ TRM cell function and regulates barrier immunity. Nat Commun. 2021 10 05; 12(1):5834.View Related Profiles. PMID: 34611166; PMCID: PMC8492657; DOI: 10.1038/s41467-021-26045-w;
     
  5. Odom CV, Kim Y, Burgess CL, Baird LA, Korkmaz FT, Na E, Shenoy AT, Arafa EI, Lam TT, Jones MR, Mizgerd JP, Traber KE, Quinton LJ. Liver-Dependent Lung Remodeling during Systemic Inflammation Shapes Responses to Secondary Infection. J Immunol. 2021 10 01; 207(7):1891-1902.View Related Profiles. PMID: 34470857; PMCID: PMC8631467; DOI: 10.4049/jimmunol.2100254;
     
  6. Wooten AK, Shenoy AT, Arafa EI, Akiyama H, Martin IMC, Jones MR, Quinton LJ, Gummuluru S, Bai G, Mizgerd JP. Unique Roles for Streptococcus pneumoniae Phosphodiesterase 2 in Cyclic di-AMP Catabolism and Macrophage Responses. Front Immunol. 2020; 11:554.View Related Profiles. PMID: 32300347; PMCID: PMC7145409; DOI: 10.3389/fimmu.2020.00554;
     
  7. Guillon A, Arafa EI, Barker KA, Belkina AC, Martin I, Shenoy AT, Wooten AK, Lyon De Ana C, Dai A, Labadorf A, Hernandez Escalante J, Dooms H, Blasco H, Traber KE, Jones MR, Quinton LJ, Mizgerd JP. Pneumonia recovery reprograms the alveolar macrophage pool. JCI Insight. 2020 02 27; 5(4).View Related Profiles. PMID: 31990682; PMCID: PMC7101156; DOI: 10.1172/jci.insight.133042;
     
  8. Shenoy AT, Wasserman GA, Arafa EI, Wooten AK, Smith NMS, Martin IMC, Jones MR, Quinton LJ, Mizgerd JP. Lung CD4+ resident memory T cells remodel epithelial responses to accelerate neutrophil recruitment during pneumonia. Mucosal Immunol. 2020 03; 13(2):334-343.View Related Profiles. PMID: 31748706; PMCID: PMC7044037; DOI: 10.1038/s41385-019-0229-2;
     
  9. Wang W, Cohen JA, Wallrapp A, Trieu KG, Barrios J, Shao F, Krishnamoorthy N, Kuchroo VK, Jones MR, Fine A, Bai Y, Ai X. Age-Related Dopaminergic Innervation Augments T Helper 2-Type Allergic Inflammation in the Postnatal Lung. Immunity. 2019 12 17; 51(6):1102-1118.e7.View Related Profiles. PMID: 31757673; PMCID: PMC6937208; DOI: 10.1016/j.immuni.2019.10.002;
     
  10. Traber KE, Dimbo EL, Symer EM, Korkmaz FT, Jones MR, Mizgerd JP, Quinton LJ. Roles of interleukin-11 during acute bacterial pneumonia. PLoS One. 2019; 14(8):e0221029.View Related Profiles. PMID: 31415618; PMCID: PMC6695241; DOI: 10.1371/journal.pone.0221029;
     
Showing 10 of 47 results. Show More

This graph shows the total number of publications by year, by first, middle/unknown, or last author.

Bar chart showing 47 publications over 19 distinct years, with a maximum of 6 publications in 2005 and 2017

YearPublications
20021
20031
20042
20056
20061
20072
20082
20092
20111
20124
20131
20143
20153
20161
20176
20194
20202
20212
20223
In addition to these self-described keywords below, a list of MeSH based concepts is available here.

cytokine
pneumonia
posttranscription
Contact for Mentoring:

72 E. Concord St Housman (R)
Boston MA 02118
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