Konrad Herbst, PhD
Postdoctoral Associate (previously held)
Boston University
Bioinformatics Graduate Program




Dr. Herbst is a passionate Molecular Biotechnologist enthusiastic about science in general and strongly rooted in computational and experimental approaches alike. So far his work has been concerned with systems approaches to study eukaryotic gene expression, synthetic biology of natural product synthesis, molecular biology method development and next-generation sequencing. He is broadly interested in understanding the fundamental rules of nature and application thereof.

Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.

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  1. Deckert A, Anders S, Morales I, De Allegri M, Nguyen HT, Souares A, McMahon S, Meurer M, Burk R, Lou D, Brugnara L, Sand M, Koeppel L, Maier-Hein L, Ross T, Adler TJ, Brenner S, Dyer C, Herbst K, Ovchinnikova S, Marx M, Schnitzler P, Knop M, Bärnighausen T, Denkinger CM. Correction: Comparison of Four Active SARS-CoV-2 Surveillance Strategies in Representative Population Sample Points: Two-Factor Factorial Randomized Controlled Trial. JMIR Public Health Surveill. 2024 Feb 16; 10:e57203. PMID: 38364221; PMCID: PMC10907930; DOI: 10.2196/57203;
     
  2. Deckert A, Anders S, Morales I, De Allegri M, Nguyen HT, Souares A, McMahon S, Meurer M, Burk R, Lou D, Brugnara L, Sand M, Koeppel L, Maier-Hein L, Ross T, Adler TJ, Brenner S, Dyer C, Herbst K, Ovchinnikova S, Marx M, Schnitzler P, Knop M, Bärnighausen T, Denkinger CM. Comparison of Four Active SARS-CoV-2 Surveillance Strategies in Representative Population Sample Points: Two-Factor Factorial Randomized Controlled Trial. JMIR Public Health Surveill. 2023 Aug 17; 9:e44204. PMID: 37235704; PMCID: PMC10437130; DOI: 10.2196/44204;
     
  3. Lou D, Meurer M, Ovchinnikova S, Burk R, Denzler A, Herbst K, Papaioannou IA, Duan Y, Jacobs ML, Witte V, Ürge D, Kirrmaier D, Krogemann M, Gubicza K, Boerner K, Bundschuh C, Weidner NM, Merle U, Knorr B, Welker A, Denkinger CM, Schnitzler P, Kräusslich HG, Dao Thi VL, De Allegri M, Nguyen HT, Deckert A, Anders S, Knop M. Scalable RT-LAMP-based SARS-CoV-2 testing for infection surveillance with applications in pandemic preparedness. EMBO Rep. 2023 May 04; 24(5):e57162. PMID: 36951170; PMCID: PMC10157315; DOI: 10.15252/embr.202357162;
     
  4. Deckert A, Anders S, De Allegri M, Nguyen HT, Souares A, McMahon S, Meurer M, Burk R, Sand M, Koeppel L, Hein LM, Roß T, Adler T, Siems T, Brugnara L, Brenner S, Herbst K, Kirrmaier D, Duan Y, Ovchinnikova S, Boerner K, Marx M, Kräusslich HG, Knop M, Bärnighausen T, Denkinger C. Effectiveness and cost-effectiveness of four different strategies for SARS-CoV-2 surveillance in the general population (CoV-Surv Study): study protocol for a two-factorial randomized controlled multi-arm trial with cluster sampling. Trials. 2021 Sep 26; 22(1):656. PMID: 34565421; PMCID: PMC8474710; DOI: 10.1186/s13063-021-05619-5;
     
  5. Herbst K, Meurer M, Kirrmaier D, Anders S, Knop M, Thi VLD. Colorimetric RT-LAMP and LAMP-sequencing forDetecting SARS-CoV-2 RNA in Clinical Samples. Bio Protoc. 2021 Mar 20; 11(6):e3964. PMID: 33855122; PMCID: PMC8032487; DOI: 10.21769/BioProtoc.3964;
     
  6. Deckert A, Anders S, de Allegri M, Nguyen HT, Souares A, McMahon S, Boerner K, Meurer M, Herbst K, Sand M, Koeppel L, Siems T, Brugnara L, Brenner S, Burk R, Lou D, Kirrmaier D, Duan Y, Ovchinnikova S, Marx M, Kräusslich HG, Knop M, Bärnighausen T, Denkinger C. Effectiveness and cost-effectiveness of four different strategies for SARS-CoV-2 surveillance in the general population (CoV-Surv Study): a structured summary of a study protocol for a cluster-randomised, two-factorial controlled trial. Trials. 2021 Jan 08; 22(1):39. PMID: 33419461; PMCID: PMC7791150; DOI: 10.1186/s13063-020-04982-z;
     
  7. Štefl M, Herbst K, Rübsam M, Benda A, Knop M. Single-Color Fluorescence Lifetime Cross-Correlation Spectroscopy In Vivo. Biophys J. 2020 Oct 06; 119(7):1359-1370. PMID: 32919495; PMCID: PMC7568003; DOI: 10.1016/j.bpj.2020.06.039;
     
  8. Dao Thi VL, Herbst K, Boerner K, Meurer M, Kremer LP, Kirrmaier D, Freistaedter A, Papagiannidis D, Galmozzi C, Stanifer ML, Boulant S, Klein S, Chlanda P, Khalid D, Barreto Miranda I, Schnitzler P, Kräusslich HG, Knop M, Anders S. A colorimetric RT-LAMP assay and LAMP-sequencing for detecting SARS-CoV-2 RNA in clinical samples. Sci Transl Med. 2020 Aug 12; 12(556). PMID: 32719001; PMCID: PMC7574920; DOI: 10.1126/scitranslmed.abc7075;
     
  9. Fueller J, Herbst K, Meurer M, Gubicza K, Kurtulmus B, Knopf JD, Kirrmaier D, Buchmuller BC, Pereira G, Lemberg MK, Knop M. CRISPR-Cas12a-assisted PCR tagging of mammalian genes. J Cell Biol. 2020 Jun 01; 219(6). PMID: 32406907; PMCID: PMC7265327; DOI: 10.1083/jcb.201910210;
     
  10. Buchmuller BC, Herbst K, Meurer M, Kirrmaier D, Sass E, Levy ED, Knop M. Pooled clone collections by multiplexed CRISPR-Cas12a-assisted gene tagging in yeast. Nat Commun. 2019 Jul 04; 10(1):2960. PMID: 31273196; PMCID: PMC6609715; DOI: 10.1038/s41467-019-10816-7;
     
Showing 10 of 14 results. Show More

This graph shows the total number of publications by year, by first, middle/unknown, or last author.

Bar chart showing 14 publications over 8 distinct years, with a maximum of 3 publications in 2020 and 2021

YearPublications
20141
20172
20181
20191
20203
20213
20232
20241

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