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Mapping Protein Interaction Networks Essential for Gonococcal Pathogenesis
05/06/2021 - 04/30/2026 (PI)
NIH/National Institute of Allergy & Infectious Diseases
5R01AI146941-02

Multiscale analysis of metabolic inflammation as a driver of breast cancer
09/09/2020 - 08/31/2025 (Multi-PI)
PI: Andrew Emili, PhD
NIH/National Cancer Institute
5U01CA243004-03

Genetic Modifiers of Protein Interaction Networks in Tauopathy
08/01/2019 - 03/31/2024 (Multi-PI)
PI: Andrew Emili, PhD
NIH/National Institute on Aging
5R01AG064932-04

Systems-level functional proteomics analysis assemblies in Alzheimer's disease and mouse models of tauopathy
02/15/2019 - 01/31/2024 (Multi-PI)
PI: Andrew Emili, PhD
NIH/National Institute on Aging
1RF1AG061706-01

RAPID: Transcription Factor Profiling for SARS-CoV2 Tolerance/Symbiosis Regulation
06/01/2020 - 05/31/2023 (Multi-PI)
PI: Andrew Emili, PhD
National Science Foundation
IOS-2031624

Mapping Pathogenic Coronavirus Viral-Host Protein Interaction Environments for Target Discovery
08/03/2020 - 01/02/2022 (Multi-PI)
PI: Andrew Emili, PhD
Merck, Sharp & Dohme LLC


A new human iPSC in vitro system to model the inception of lung adenocarcinoma (2nd Year Renewal - WWDA)
12/01/2020 - 12/31/2021 (Multi-PI)
PI: Andrew Emili, PhD
Janssen Research & Development, LLC


Engineering a smart CAR platform for human regulatory T cells
09/30/2019 - 09/29/2021 (Co-Investigator)
PI: Wilson Wong, PhD
NIH/National Institute of Biomedical Imaging & Bioengineering
1R56EB027729-01A1

A new human iPSC in vitro system to model the inception of lung adenocarcinoma
06/01/2020 - 11/30/2020 (Multi-PI)
PI: Andrew Emili, PhD
Johnson & Johnson Enterprise Innovation, Inc.


Mapping the blood cell protein complexosome
07/01/2017 - 05/31/2020 (Subcontract PI)
University of Texas at Austin NIH NIDDK
5R01DK110520-03

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Yr Title Project-Sub Proj Pubs

Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.

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  1. Sae-Lee W, McCafferty CL, Verbeke EJ, Havugimana PC, Papoulas O, McWhite CD, Houser JR, Vanuytsel K, Murphy GJ, Drew K, Emili A, Taylor DW, Marcotte EM. The protein organization of a red blood cell. Cell Rep. 2022 Jul 19; 40(3):111103.View Related Profiles. PMID: 35858567
     
  2. Havugimana PC, Goel RK, Phanse S, Youssef A, Padhorny D, Kotelnikov S, Kozakov D, Emili A. Scalable multiplex co-fractionation/mass spectrometry platform for accelerated protein interactome discovery. Nat Commun. 2022 Jul 13; 13(1):4043.View Related Profiles. PMID: 35831314; DOI: 10.1038/s41467-022-31809-z;
     
  3. Moore J, Hekman R, Blum BC, Lawton M, Lehoux S, Stachler M, Pleskow D, Sawhney MS, Cummings RD, Emili A, Qureshi A. Pilot Study Showing Feasibility of Phosphoproteomic Profiling of Pathway-Level Molecular Alterations in Barrett's Esophagus. Genes (Basel). 2022 Jul 07; 13(7).View Related Profiles. PMID: 35885999; DOI: 10.3390/genes13071215;
     
  4. Hume AJ, Heiden B, Olejnik J, Suder EL, Ross S, Scoon WA, Bullitt E, Ericsson M, White MR, Turcinovic J, Thao TTN, Hekman RM, Kaserman JE, Huang J, Alysandratos KD, Toth GE, Jakab F, Kotton DN, Wilson AA, Emili A, Thiel V, Connor JH, Kemenesi G, Cifuentes D, Mühlberger E. Correction: Recombinant Lloviu virus as a tool to study viral replication and host responses. PLoS Pathog. 2022 Jun; 18(6):e1010659.View Related Profiles. PMID: 35749346; DOI: 10.1371/journal.ppat.1010659;
     
  5. Yunes SA, Willoughby JLS, Kwan JH, Biagi JM, Pokharel N, Chin HG, York EA, Su KC, George K, Shah JV, Emili A, Schaus SE, Hansen U. Factor quinolinone inhibitors disrupt spindles and multiple LSF (TFCP2)-protein interactions in mitosis, including with microtubule-associated proteins. PLoS One. 2022; 17(6):e0268857.View Related Profiles. PMID: 35704642; DOI: 10.1371/journal.pone.0268857;
     
  6. Beierle JA, Yao EJ, Goldstein SI, Lynch WB, Scotellaro JL, Shah AA, Sena KD, Wong AL, Linnertz CL, Averin O, Moody DE, Reilly CA, Peltz G, Emili A, Ferris MT, Bryant CD. Zhx2 Is a Candidate Gene Underlying Oxymorphone Metabolite Brain Concentration Associated with State-Dependent Oxycodone Reward. J Pharmacol Exp Ther. 2022 Aug; 382(2):167-180.View Related Profiles. PMID: 35688478; DOI: 10.1124/jpet.122.001217;
     
  7. Kenney DJ, O'Connell AK, Turcinovic J, Montanaro P, Hekman RM, Tamura T, Berneshawi AR, Cafiero TR, Al Abdullatif S, Blum B, Goldstein SI, Heller BL, Gertje HP, Bullitt E, Trachtenberg AJ, Chavez E, Nono ET, Morrison C, Tseng AE, Sheikh A, Kurnick S, Grosz K, Bosmann M, Ericsson M, Huber BR, Saeed M, Balazs AB, Francis KP, Klose A, Paragas N, Campbell JD, Connor JH, Emili A, Crossland NA, Ploss A, Douam F. Humanized mice reveal a macrophage-enriched gene signature defining human lung tissue protection during SARS-CoV-2 infection. Cell Rep. 2022 Apr 19; 39(3):110714.View Related Profiles. PMID: 35421379; DOI: 10.1016/j.celrep.2022.110714;
     
  8. Lee ES, Smith HW, Wolf EJ, Guvenek A, Wang YE, Emili A, Tian B, Palazzo AF. ZFC3H1 and U1-70K promote the nuclear retention of mRNAs with 5' splice site motifs within nuclear speckles. RNA. 2022 06; 28(6):878-894. PMID: 35351812; DOI: 10.1261/rna.079104.122;
     
  9. Kim SS, Kycia I, Karski M, Ma RK, Bordt EA, Kwan J, Karki A, Winter E, Aktas RG, Wu Y, Emili A, Bauer DE, Sethupathy P, Vakili K. DNAJB1-PRKACA in HEK293T cells induces LINC00473 overexpression that depends on PKA signaling. PLoS One. 2022; 17(2):e0263829. PMID: 35167623; DOI: 10.1371/journal.pone.0263829;
     
  10. Cardamone MD, Gao Y, Kwan J, Hayashi V, Sheeran M, Xu J, English J, Orofino J, Emili A, Perissi V. Neuralized-like protein 4 (NEURL4) mediates ADP-ribosylation of mitochondrial proteins. J Cell Biol. 2022 03 07; 221(3).View Related Profiles. PMID: 35157000; DOI: 10.1083/jcb.202101021;
     
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This graph shows the total number of publications by year, by first, middle/unknown, or last author.



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