Ahmad Khalil | Profiles RNS

Ahmad (Mo) Khalil, PhD

Professor

Boston University College of Engineering

Biomedical Engineering

PhD, Massachusetts Institute of Technology
MS, Massachusetts Institute of Technology
BS, Stanford University

Websites

	College of Engineering Faculty
	Khalil Lab
	BU Rajen Kilachand Center for Integrated Life Sciences & Engineering
	LinkedIn
	AIChE Profile
	Google Scholar
	EBRC Profile

ORCID : 0000-0002-8214-0546

My research is interested in how molecular “circuits” enable core cellular functions, such as signal processing, computation, and epigenetic memory. My team develops and applies two complementary approaches to discover the design principles of genetic circuits, and to enable their purposeful manipulation for biomedical applications, such as cell-based therapies and devices. First, we apply synthetic biology approaches, in which we design and build regulatory circuits in living cells. This bottom-up approach allows us to test many different circuit designs and identify which circuits are sufficient to program cellular function. We have pioneered this approach to design and study molecular circuits that control gene regulation and epigenetic memory in eukaryotic cells, with important implications for biotechnology and therapeutics. Second, we apply evolutionary approaches, in which we develop methods for prospective evolution of biological systems in the laboratory. A central pillar of this effort is “eVOLVER”, a highly-flexible continuous culture system we invented that enables large-scale automation of growth, testing, and evolution of cellular systems in precisely-controlled conditions.

BU Research
NIH RePORTER Research

Programmable benchtop bioreactors for scalable eco-evolutionary dynamics of the human microbiome
06/10/2022 - 05/31/2027 (PI)
NIH/National Institute of Allergy & Infectious Diseases
1R01AI171100-01

Schmidt Science Polymath Award
12/01/2022 - 10/31/2026 (PI)
The Eric and Wendy Schmidt Fund For Strategic Innovation

Epigenetically Programmed Biological Materials
08/12/2020 - 08/11/2025 (PI)
Department of Defense/ONR

Scalable and automatable nanobody discovery and affinity maturation in yeast
07/13/2022 - 07/13/2025 (PI)
FTX Philanthropy, Inc.

Deciphering a new dimension of GPCR biology through the continuous evolution of biased modulators
07/01/2022 - 06/30/2025 (Subcontract PI)
University of California, Irvine Keck Foundation

URoL: Epigenetics 2: Robustness and Adaptability of the Dynamic Epigenome: A Multiscale Approach
10/01/2022 - 08/31/2024 (Subcontract PI)
Brandeis University National Science Fdn

Semi-continuous evolution of DNMT3A/L-binding nanobodies for targeted epigenome editing
09/01/2021 - 08/31/2024 (PI)
Chroma Medicine, Inc.

Schmidt Futures "Modular Biofilm Reactors to Convert Waste-Based Feedstocks to Vitamin A"
03/01/2023 - 08/30/2024 (Multi-PI)
PI: Ahmad (Mo) Khalil, PhD
BioMADE Schmidt Futures

Synthetic Biology and Biotechnology (SB2) Predoctoral Training Program
07/01/2019 - 06/30/2024 (Multi-PI)
PI: Ahmad (Mo) Khalil, PhD
NIH/National Institute of General Medical Sciences
5T32GM130546-04

Synthetic toolkit for precision gene expression control and signal processing in mammalian cells
05/01/2020 - 01/31/2024 (Multi-PI)
PI: Ahmad (Mo) Khalil, PhD
NIH/National Institute of Biomedical Imaging & Bioengineering
5R01EB029483-04

Showing 10 of 44 results. Show All Results

Title

Yr	Title	Project-Sub Proj
2023	Synthetic toolkit for precision gene expression control and signal processing in mammalian cells	5R01EB029483-04
2022	Programmable benchtop bioreactors for scalable eco-evolutionary dynamics of the human microbiome	1R01AI171100-01
2022	Synthetic toolkit for precision gene expression control and signal processing in mammalian cells	5R01EB029483-03
2022	Synthetic Biology and Biotechnology (SB2) Predoctoral Training Program	5T32GM130546-04
2022	ePACE: an automated system for high-throughput, closed-loop control of continuous molecular evolution to enable novel therapeutics	5R01EB027793-04
2021	Synthetic toolkit for precision gene expression control and signal processing in mammalian cells	5R01EB029483-02
2021	Synthetic Biology and Biotechnology (SB2) Predoctoral Training Program	5T32GM130546-03
2021	ePACE: an automated system for high-throughput, closed-loop control of continuous molecular evolution to enable novel therapeutics	5R01EB027793-03
2020	Synthetic toolkit for precision gene expression control and signal processing in mammalian cells	1R01EB029483-01
2020	Synthetic Biology and Biotechnology (SB2) Predoctoral Training Program	5T32GM130546-02

Showing 10 of 14 results. Show All Results

Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.

iCite Analysis Copy PMIDs To Clipboard

Garc A-Ruano D, Jain A, Heins ZJ, Wong BG, Wolle EY, Khalil AS, Coudreuse D. Long-term evolution of proliferating cells using the eVOLVER platform. bioRxiv. 2023 Apr 19. PMID: 37034650; PMCID: PMC10081182; DOI: 10.1101/2023.03.28.534552;

Martinez-Corral R, Park M, Biette KM, Friedrich D, Scholes C, Khalil AS, Gunawardena J, DePace AH. Transcriptional kinetic synergy: A complex landscape revealed by integrating modeling and synthetic biology. Cell Syst. 2023 Apr 19; 14(4):324-339.e7. PMID: 37080164

Sutradhar I, Ching C, Desai D, Heins Z, Khalil AS, Zaman MH. Effects of Antibiotic Interaction on Antimicrobial Resistance Development in Wastewater. bioRxiv. 2023 Feb 10.View Related Profiles.

Khalil, Ahmad
Zaman, Muhammad

PMID: 36798199; PMCID: PMC9934683; DOI: 10.1101/2023.02.10.528009;

Jo C, Zhang J, Tam JM, Church GM, Khalil AS, Segrè D, Tang TC. Unlocking the magic in mycelium: Using synthetic biology to optimize filamentous fungi for biomanufacturing and sustainability. Mater Today Bio. 2023 Apr; 19:100560. PMID: 36756210; PMCID: PMC9900623; DOI: 10.1016/j.mtbio.2023.100560;

Cabrera A, Edelstein HI, Glykofrydis F, Love KS, Palacios S, Tycko J, Zhang M, Lensch S, Shields CE, Livingston M, Weiss R, Zhao H, Haynes KA, Morsut L, Chen YY, Khalil AS, Wong WW, Collins JJ, Rosser SJ, Polizzi K, Elowitz MB, Fussenegger M, Hilton IB, Leonard JN, Bintu L, Galloway KE, Deans TL. The sound of silence: Transgene silencing in mammalian cell engineering. Cell Syst. 2022 Dec 21; 13(12):950-973. PMID: 36549273; PMCID: PMC9880859; DOI: 10.1016/j.cels.2022.11.005;

Li HS, Israni DV, Gagnon KA, Gan KA, Raymond MH, Sander JD, Roybal KT, Joung JK, Wong WW, Khalil AS. Multidimensional control of therapeutic human cell function with synthetic gene circuits. Science. 2022 Dec 16; 378(6625):1227-1234. PMID: 36520914; PMCID: PMC10054295; DOI: 10.1126/science.ade0156;

Lee S, Khalil AS, Wong WW. Recent progress of gene circuit designs in immune cell therapies. Cell Syst. 2022 Nov 16; 13(11):864-873. PMID: 36395726; PMCID: PMC9681026; DOI: 10.1016/j.cels.2022.09.006;

Sanford A, Kiriakov S, Khalil AS. A Toolkit for Precise, Multigene Control in Saccharomyces cerevisiae. ACS Synth Biol. 2022 Dec 16; 11(12):3912-3920. PMID: 36367334; PMCID: PMC9764411; DOI: 10.1021/acssynbio.2c00423;

Sun Q, Vega NM, Cervantes B, Mancuso CP, Mao N, Taylor MN, Collins JJ, Khalil AS, Gore J, Lu TK. Enhancing nutritional niche and host defenses by modifying the gut microbiome. Mol Syst Biol. 2022 Nov; 18(11):e9933. PMID: 36377768; PMCID: PMC9664710; DOI: 10.15252/msb.20209933;

Shaw WM, Zhang Y, Lu X, Khalil AS, Ladds G, Luo X, Ellis T. Screening microbially produced ?9-tetrahydrocannabinol using a yeast biosensor workflow. Nat Commun. 2022 Sep 20; 13(1):5509. PMID: 36127350; PMCID: PMC9489785; DOI: 10.1038/s41467-022-33207-x;

Showing 10 of 52 results. Show More

Huang TP, Heins ZJ, Miller SM, Wong BG, Balivada PA, Wang T, Khalil AS, Liu DR. High-throughput continuous evolution of compact Cas9 variants targeting single-nucleotide-pyrimidine PAMs. Nat Biotechnol. 2023 Jan; 41(1):96-107. PMID: 36076084; PMCID: PMC9849140; DOI: 10.1038/s41587-022-01410-2;

Li HS, Wong NM, Tague E, Ngo JT, Khalil AS, Wong WW. High-performance multiplex drug-gated CAR circuits. Cancer Cell. 2022 Nov 14; 40(11):1294-1305.e4.View Related Profiles.

Khalil, Ahmad
Ngo, John

PMID: 36084652; PMCID: PMC9669166; DOI: 10.1016/j.ccell.2022.08.008;

Molina RS, Rix G, Mengiste AA, Alvarez B, Seo D, Chen H, Hurtado J, Zhang Q, Donato García-García J, Heins ZJ, Almhjell PJ, Arnold FH, Khalil AS, Hanson AD, Dueber JE, Schaffer DV, Chen F, Kim S, Ángel Fernández L, Shoulders MD, Liu CC. In vivo hypermutation and continuous evolution. Nat Rev Methods Primers. 2022; 2. PMID: 37073402; PMCID: PMC10108624; DOI: 10.1038/s43586-022-00130-w;

Zhu I, Liu R, Garcia JM, Hyrenius-Wittsten A, Piraner DI, Alavi J, Israni DV, Liu B, Khalil AS, Roybal KT. Modular design of synthetic receptors for programmed gene regulation in cell therapies. Cell. 2022 Apr 14; 185(8):1431-1443.e16. PMID: 35427499; PMCID: PMC9108009; DOI: 10.1016/j.cell.2022.03.023;

Kunze C, Khalil AS. One cell, many fates. Science. 2022 Jan 21; 375(6578):262-263. PMID: 35050646

Mancuso CP, Lee H, Abreu CI, Gore J, Khalil AS. Environmental fluctuations reshape an unexpected diversity-disturbance relationship in a microbial community. Elife. 2021 09 03; 10. PMID: 34477107; PMCID: PMC8460265; DOI: 10.7554/eLife.67175;

Sutradhar I, Ching C, Desai D, Suprenant M, Briars E, Heins Z, Khalil AS, Zaman MH. Computational Model To Quantify the Growth of Antibiotic-Resistant Bacteria in Wastewater. mSystems. 2021 Jun 29; 6(3):e0036021.View Related Profiles.

Khalil, Ahmad
Zaman, Muhammad

PMID: 34100640; PMCID: PMC8579810; DOI: 10.1128/mSystems.00360-21;

Moussa HF, Angstman JF, Khalil AS. Here to stay: Writing lasting epigenetic memories. Cell. 2021 04 29; 184(9):2281-2283. PMID: 33930295; DOI: 10.1016/j.cell.2021.04.007;

Annas GJ, Beisel CL, Clement K, Crisanti A, Francis S, Galardini M, Galizi R, Grünewald J, Immobile G, Khalil AS, Müller R, Pattanayak V, Petri K, Paul L, Pinello L, Simoni A, Taxiarchi C, Joung JK. A Code of Ethics for Gene Drive Research. CRISPR J. 2021 02; 4(1):19-24.View Related Profiles.

Khalil, Ahmad
Annas, George

PMID: 33571044; PMCID: PMC7898401; DOI: 10.1089/crispr.2020.0096;

Qian J, Lu ZX, Mancuso CP, Jhuang HY, Del Carmen Barajas-Ornelas R, Boswell SA, Ramírez-Guadiana FH, Jones V, Sonti A, Sedlack K, Artzi L, Jung G, Arammash M, Pettit ME, Melfi M, Lyon L, Owen SV, Baym M, Khalil AS, Silver PA, Rudner DZ, Springer M. Barcoded microbial system for high-resolution object provenance. Science. 2020 06 05; 368(6495):1135-1140. PMID: 32499444

Zhong Z, Wong BG, Ravikumar A, Arzumanyan GA, Khalil AS, Liu CC. Automated Continuous Evolution of Proteins in Vivo. ACS Synth Biol. 2020 06 19; 9(6):1270-1276. PMID: 32374988; PMCID: PMC7370864; DOI: 10.1021/acssynbio.0c00135;

Chiesa G, Kiriakov S, Khalil AS. Protein assembly systems in natural and synthetic biology. BMC Biol. 2020 03 26; 18(1):35. PMID: 32216777; PMCID: PMC7099826; DOI: 10.1186/s12915-020-0751-4;

Tanner K, Mancuso CP, Peretó J, Khalil AS, Vilanova C, Pascual J. Sphingomonas solaris sp. nov., isolated from a solar panel in Boston, Massachusetts. Int J Syst Evol Microbiol. 2020 Mar; 70(3):1814-1821. PMID: 31951194; PMCID: PMC7539908; DOI: 10.1099/ijsem.0.003977;

Heins ZJ, Mancuso CP, Kiriakov S, Wong BG, Bashor CJ, Khalil AS. Designing Automated, High-throughput, Continuous Cell Growth Experiments Using eVOLVER. J Vis Exp. 2019 05 19; (147). PMID: 31157778; PMCID: PMC6738936; DOI: 10.3791/59652;

Bashor CJ, Patel N, Choubey S, Beyzavi A, Kondev J, Collins JJ, Khalil AS. Complex signal processing in synthetic gene circuits using cooperative regulatory assemblies. Science. 2019 05 10; 364(6440):593-597. PMID: 31000590; PMCID: PMC6650298; DOI: 10.1126/science.aau8287;

Lee HH, Ostrov N, Wong BG, Gold MA, Khalil AS, Church GM. Functional genomics of the rapidly replicating bacterium Vibrio natriegens by CRISPRi. Nat Microbiol. 2019 07; 4(7):1105-1113. PMID: 30962569; DOI: 10.1038/s41564-019-0423-8;

Park M, Patel N, Keung AJ, Khalil AS. Engineering Epigenetic Regulation Using Synthetic Read-Write Modules. Cell. 2019 Jan 10; 176(1-2):227-238.e20. PMID: 30528434; PMCID: PMC6329643; DOI: 10.1016/j.cell.2018.11.002;

Weinstein ZB, Kuru N, Kiriakov S, Palmer AC, Khalil AS, Clemons PA, Zaman MH, Roth FP, Cokol M. Modeling the impact of drug interactions on therapeutic selectivity. Nat Commun. 2018 08 27; 9(1):3452.View Related Profiles.

Khalil, Ahmad
Zaman, Muhammad
Weinstein, Zohar

PMID: 30150706; PMCID: PMC6110842; DOI: 10.1038/s41467-018-05954-3;

Wong BG, Mancuso CP, Kiriakov S, Bashor CJ, Khalil AS. Precise, automated control of conditions for high-throughput growth of yeast and bacteria with eVOLVER. Nat Biotechnol. 2018 08; 36(7):614-623. PMID: 29889214; PMCID: PMC6035058; DOI: 10.1038/nbt.4151;

Zheng X, Beyzavi A, Krakowiak J, Patel N, Khalil AS, Pincus D. Hsf1 Phosphorylation Generates Cell-to-Cell Variation in Hsp90 Levels and Promotes Phenotypic Plasticity. Cell Rep. 2018 03 20; 22(12):3099-3106. PMID: 29562166; PMCID: PMC5893160; DOI: 10.1016/j.celrep.2018.02.083;

Krakowiak J, Zheng X, Patel N, Feder ZA, Anandhakumar J, Valerius K, Gross DS, Khalil AS, Pincus D. Hsf1 and Hsp70 constitute a two-component feedback loop that regulates the yeast heat shock response. Elife. 2018 02 02; 7. PMID: 29393852; PMCID: PMC5809143; DOI: 10.7554/eLife.31668;

Newby GA, Kiriakov S, Hallacli E, Kayatekin C, Tsvetkov P, Mancuso CP, Bonner JM, Hesse WR, Chakrabortee S, Manogaran AL, Liebman SW, Lindquist S, Khalil AS. A Genetic Tool to Track Protein Aggregates and Control Prion Inheritance. Cell. 2017 Nov 02; 171(4):966-979.e18. PMID: 29056345; PMCID: PMC5675731; DOI: 10.1016/j.cell.2017.09.041;

Hawkins F, Kramer P, Jacob A, Driver I, Thomas DC, McCauley KB, Skvir N, Crane AM, Kurmann AA, Hollenberg AN, Nguyen S, Wong BG, Khalil AS, Huang SX, Guttentag S, Rock JR, Shannon JM, Davis BR, Kotton DN. Prospective isolation of NKX2-1-expressing human lung progenitors derived from pluripotent stem cells. J Clin Invest. 2017 Jun 01; 127(6):2277-2294.View Related Profiles.

Khalil, Ahmad
Jacob, Anjali
Hollenberg, Anthony
Kotton, Darrell
Hawkins, Finn
Rock, Jason

PMID: 28463226; PMCID: PMC5451263; DOI: 10.1172/JCI89950;

Zheng X, Krakowiak J, Patel N, Beyzavi A, Ezike J, Khalil AS, Pincus D. Dynamic control of Hsf1 during heat shock by a chaperone switch and phosphorylation. Elife. 2016 11 10; 5. PMID: 27831465; PMCID: PMC5127643; DOI: 10.7554/eLife.18638;

Park M, Keung AJ, Khalil AS. The epigenome: the next substrate for engineering. Genome Biol. 2016 08 31; 17(1):183. PMID: 27582168; PMCID: PMC5006378; DOI: 10.1186/s13059-016-1046-5;

Mancuso CP, Kiriakov S, Khalil AS. Cellular Advantages to Signaling in a Digital World. Cell Syst. 2016 Aug; 3(2):114-115. PMID: 27559921

Garcia-Ojalvo J, Khalil AS, McCarthy J. Biological Insights from Synthetic Biology. Integr Biol (Camb). 2016 Apr 18; 8(4):380-2. PMID: 27064018; DOI: 10.1039/c6ib90013e;

Keung AJ, Khalil AS. MOLECULAR BIOLOGY. A unifying model of epigenetic regulation. Science. 2016 Feb 12; 351(6274):661-2. PMID: 26912843; PMCID: PMC6124315; DOI: 10.1126/science.aaf1647;

Lobritz MA, Belenky P, Porter CB, Gutierrez A, Yang JH, Schwarz EG, Dwyer DJ, Khalil AS, Collins JJ. Antibiotic efficacy is linked to bacterial cellular respiration. Proc Natl Acad Sci U S A. 2015 Jul 07; 112(27):8173-80. PMID: 26100898

Keung AJ, Joung JK, Khalil AS, Collins JJ. Chromatin regulation at the frontier of synthetic biology. Nat Rev Genet. 2015 Mar; 16(3):159-71. PMID: 25668787

Keung AJ, Bashor CJ, Kiriakov S, Collins JJ, Khalil AS. Using targeted chromatin regulators to engineer combinatorial and spatial transcriptional regulation. Cell. 2014 Jul 03; 158(1):110-20. PMID: 24995982

Dwyer DJ, Belenky PA, Yang JH, MacDonald IC, Martell JD, Takahashi N, Chan CT, Lobritz MA, Braff D, Schwarz EG, Ye JD, Pati M, Vercruysse M, Ralifo PS, Allison KR, Khalil AS, Ting AY, Walker GC, Collins JJ. Antibiotics induce redox-related physiological alterations as part of their lethality. Proc Natl Acad Sci U S A. 2014 May 20; 111(20):E2100-9. PMID: 24803433; PMCID: PMC4034191; DOI: 10.1073/pnas.1401876111;

Litcofsky KD, Afeyan RB, Krom RJ, Khalil AS, Collins JJ. Iterative plug-and-play methodology for constructing and modifying synthetic gene networks. Nat Methods. 2012 Nov; 9(11):1077-80.View Related Profiles.

Khalil, Ahmad
Krom, Russell-John

PMID: 23042452; PMCID: PMC3492501; DOI: 10.1038/nmeth.2205;

Khalil AS, Lu TK, Bashor CJ, Ramirez CL, Pyenson NC, Joung JK, Collins JJ. A synthetic biology framework for programming eukaryotic transcription functions. Cell. 2012 Aug 03; 150(3):647-58. PMID: 22863014

Vega NM, Allison KR, Khalil AS, Collins JJ. Signaling-mediated bacterial persister formation. Nat Chem Biol. 2012 Mar 18; 8(5):431-3. PMID: 22426114; PMCID: PMC3329571; DOI: 10.1038/nchembio.915;

Khalil AS, Collins JJ. Synthetic biology: applications come of age. Nat Rev Genet. 2010 May; 11(5):367-79. PMID: 20395970; PMCID: PMC2896386; DOI: 10.1038/nrg2775;

Borenstein JT, Tupper MM, Mack PJ, Weinberg EJ, Khalil AS, Hsiao J, García-Cardeña G. Functional endothelialized microvascular networks with circular cross-sections in a tissue culture substrate. Biomed Microdevices. 2010 Feb; 12(1):71-9. PMID: 19787455

Lu TK, Khalil AS, Collins JJ. Next-generation synthetic gene networks. Nat Biotechnol. 2009 Dec; 27(12):1139-50. PMID: 20010597; PMCID: PMC2796205; DOI: 10.1038/nbt.1591;

Khalil AS, Appleyard DC, Labno AK, Georges A, Karplus M, Belcher AM, Hwang W, Lang MJ. Kinesin's cover-neck bundle folds forward to generate force. Proc Natl Acad Sci U S A. 2008 Dec 09; 105(49):19247-52. PMID: 19047639; PMCID: PMC2592363; DOI: 10.1073/pnas.0805147105;

Khalil AS, Ferrer JM, Brau RR, Kottmann ST, Noren CJ, Lang MJ, Belcher AM. Single M13 bacteriophage tethering and stretching. Proc Natl Acad Sci U S A. 2007 Mar 20; 104(12):4892-7. PMID: 17360403; PMCID: PMC1829235; DOI: 10.1073/pnas.0605727104;

Khalil AS, Bouma BE, Kaazempur Mofrad MR. A combined FEM/genetic algorithm for vascular soft tissue elasticity estimation. Cardiovasc Eng. 2006 Sep; 6(3):93-102. PMID: 16967325; DOI: 10.1007/s10558-006-9013-5;

Khalil AS, Chan RC, Chau AH, Bouma BE, Mofrad MR. Tissue elasticity estimation with optical coherence elastography: toward mechanical characterization of in vivo soft tissue. Ann Biomed Eng. 2005 Nov; 33(11):1631-9. PMID: 16341928; DOI: 10.1007/s10439-005-6766-3;

This graph shows the total number of publications by year, by first, middle/unknown, or last author.

Bar chart showing 52 publications over 17 distinct years, with a maximum of 11 publications in 2022

Bar chart showing 52 publications over 17 distinct years, with a maximum of 11 publications in 2022

Year	Publications
2005	1
2006	1
2007	1
2008	1
2009	1
2010	2
2012	3
2014	2
2015	2
2016	5
2017	2
2018	5
2019	3
2020	4
2021	4
2022	11
2023	4

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Nature 12/15/2022

Designer Protein Acts as a Switch for Cellular Circuitry

The Scientist 7/25/2019

The ‘dawn’ of designer proteins: Biologists build a protein that turns cells on and off

The Washington Post 7/24/2019

2021 AIMBE College of Fellows

2020 DoD Vannevar Bush Faculty Fellowship

2019 Dorf-Ebner Distinguished Faculty Fellow

2018 National Academy of Engineering: Frontiers of Engineering Invitee

2017 Presidential Early Career Award for Scientists and Engineers

2017 Boston University: Early Career Research Excellence Award

2016 National Institute of Health: New Innovator Award

2016 DARPA Young Faculty Award

2016 College of Engineering, Boston University: Outstanding Professor of the Year

2016 Biomedical Engineering Dept., Boston University: Award for Teaching Excellence

2015 Hartwell Foundation: Individual Biomedical Research Award

2015 Biomedical Engineering Dept., Boston University: Award for Teaching Excellence

2014 National Academy of Engineering: Frontiers of Engineering Education Invitee

2014 National Science Foundation: CAREER Award

2013-2016 Boston University: Innovation Career Development Professorship

2013 Biomedical Engineering Dept., Boston University: Award for Teaching Excellence

2013 Institut Mérieux: Research Grant Award

2012 Wallace H. Coulter Foundation: Translational Research Partnership Award

2005 Charles Stark Draper Laboratory, Massachusetts Institute of Technology: Graduate Fellowship

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